User: JackieMe

gravatar for JackieMe
JackieMe10
Reputation:
10
Status:
New User
Location:
Wuhan University, Wuhan, China
Last seen:
1 week, 5 days ago
Joined:
1 year, 4 months ago
Email:
j************@hotmail.com

Posts by JackieMe

<prev • 4 results • page 1 of 1 • next >
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TCGA RNA-Seq data for gene correlation test
... I am new to Bioinformatics and still learning. I downlaoded TCGA RNA-Seqv2 data from [FireHose][1]: > COAD.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt and exact gene count data. Using DESeq2 for DEG analysis and got about 1900+ genes with logFC>=2 and FDR & ...
R tcga rna-seq written 4 months ago by JackieMe10
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Answer: A: the question about new TCGA Rnaseq data
... [FireHose][1] is a good place to get rsem normalized result of TCGA data. [1]: http://gdac.broadinstitute.org/ ...
written 9 months ago by JackieMe10
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Answer: A: How can I upgrade bowtie2-2.2.6 to bowtie2-2.2.9 or uninstall this old version?
... If you r using the Linux binary version of bowtie2, the simplest way might be to remove the bowtie2-2.2.6 folder and replace it with bowtie2-2.2.9 folder. cd /path/to/bowtie2-2.2.6 rm -rf bowtie2-2.2.6 cp -r /path/to/bowtie2-2.2.9_folder . and then modify you PATH to include the n ...
written 15 months ago by JackieMe10
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Comment: A: sharing some naive codes for microarray normalization in R with whom are too new
... Also useful for beginners like me. Thanks for sharing. ...
written 16 months ago by JackieMe10

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Supporter 6 months ago, voted at least 25 times.

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