User: JackieMe

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JackieMe40
Reputation:
40
Status:
New User
Location:
Wuhan University, Wuhan, China
Last seen:
3 weeks, 4 days ago
Joined:
1 year, 11 months ago
Email:
j************@hotmail.com

Posts by JackieMe

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Help with rat RNA-Seq data with the HISAT-StringTie workflow
... Great! I got count data after using this GTF file. Thank you very much! ...
written 6 weeks ago by JackieMe40
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Comment: C: Help with rat RNA-Seq data with the HISAT-StringTie workflow
... OK. I may use it when my problems are solved ...
written 7 weeks ago by JackieMe40
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Comment: C: Help with rat RNA-Seq data with the HISAT-StringTie workflow
... Thanks for your help. I'll try this. ...
written 7 weeks ago by JackieMe40
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Help with rat RNA-Seq data with the HISAT-StringTie workflow
... I have some paired end RNA-Seq from rats which is a 2 conditions x 4 replicates experiment design. My primary goal is to find DEGs between the 2 different conditions. After QC and triming there are the clean_fastq files. I want to follow the Nature Protocol [Transcript-level expression analysis o ...
hisat rat reference rna-seq written 7 weeks ago by JackieMe40
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TCGA RNA-Seq data for gene correlation test
... I am new to Bioinformatics and still learning. I downlaoded TCGA RNA-Seqv2 data from [FireHose][1]: > COAD.rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data.data.txt and exact gene count data. Using DESeq2 for DEG analysis and got about 1900+ genes with logFC>=2 and FDR & ...
R tcga rna-seq written 11 months ago by JackieMe40
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Answer: A: the question about new TCGA Rnaseq data
... [FireHose][1] is a good place to get rsem normalized result of TCGA data. [1]: http://gdac.broadinstitute.org/ ...
written 16 months ago by JackieMe40
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Answer: A: How can I upgrade bowtie2-2.2.6 to bowtie2-2.2.9 or uninstall this old version?
... If you r using the Linux binary version of bowtie2, the simplest way might be to remove the bowtie2-2.2.6 folder and replace it with bowtie2-2.2.9 folder. cd /path/to/bowtie2-2.2.6 rm -rf bowtie2-2.2.6 cp -r /path/to/bowtie2-2.2.9_folder . and then modify you PATH to include the n ...
written 23 months ago by JackieMe40
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Comment: A: sharing some naive codes for microarray normalization in R with whom are too new
... Also useful for beginners like me. Thanks for sharing. ...
written 24 months ago by JackieMe40

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Supporter 14 months ago, voted at least 25 times.

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