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0
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7
replies
1.1k
views
Issue with Bowtie2 mapping
Bowtie2 Trimmomatic mapping Paired-End
4.7 years ago by reza ▴ 300
0
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1
reply
1.1k
views
Comment: C: Issue with Bowtie2 mapping
4.7 years ago by reza ▴ 300
4
votes
3
replies
2.5k
views
whole genome alignment using nucmer
Assembly alignment genome nucmer
updated 5.0 years ago by ▴ 130 • written 5.0 years ago by ▴ 300
0
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0
replies
1.5k
views
Comment: C: variant calling in mitochondria using whole genome sequencing
5.3 years ago by reza ▴ 300
1
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2
replies
1.5k
views
variant calling in mitochondria using whole genome sequencing
mitochondria SNP
5.3 years ago by reza ▴ 300
0
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1
reply
2.9k
views
Comment: C: several effect for one SNP annotated by SNPeff
5.3 years ago by reza ▴ 300
3
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8
replies
2.9k
views
several effect for one SNP annotated by SNPeff
SNPeff annotation SNP
5.3 years ago by reza ▴ 300
0
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1
reply
2.9k
views
Comment: C: several effect for one SNP annotated by SNPeff
5.3 years ago by reza ▴ 300
1
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0
replies
3.1k
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Comment: C: How can I call somatic CNV in tumor samples with no reference (control) samples?
5.3 years ago by reza ▴ 300
0
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1
reply
2.9k
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Comment: C: several effect for one SNP annotated by SNPeff
5.3 years ago by reza ▴ 300
0
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1
reply
2.9k
views
Comment: C: how to extract gene name for LOF (loss of function) variants
5.7 years ago by reza ▴ 300
0
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1
reply
2.9k
views
Comment: C: how to extract gene name for LOF (loss of function) variants
5.7 years ago by reza ▴ 300
6
votes
9
replies
2.9k
views
how to extract gene name for LOF (loss of function) variants
snpEff LOF variants
updated 5.7 years ago by 161k • written 5.7 years ago by ▴ 300
0
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0
replies
2.2k
views
Comment: C: how to extract LOF variants from vcf file?
5.7 years ago by reza ▴ 300
0
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1
reply
2.2k
views
Comment: C: how to extract LOF variants from vcf file?
5.8 years ago by reza ▴ 300
2
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4
replies
2.2k
views
how to extract LOF variants from vcf file?
variants vcf Loss function variants
5.8 years ago by reza ▴ 300
6
votes
11
replies
3.8k
views
number of functions is more than namber of variants in snpEff's output
snp snpEff next-gen
updated 5.9 years ago by 16k • written 7.1 years ago by ▴ 300
0
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0
replies
2.6k
views
Comment: C: Correct Trimmomatic adapter sequence file to use?
6.0 years ago by reza ▴ 300
0
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0
replies
1.1k
views
Comment: C: how to retrieve sequences from genome
6.0 years ago by reza ▴ 300
2
votes
4
replies
3.7k
views
workflow for variant calling using GATK in multiple paired end reads
snp next-gen
updated 6.1 years ago by ▴ 10 • written 7.3 years ago by ▴ 300
0
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0
replies
3.9k
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Comment: C: CNV detection using BAM file
6.1 years ago by reza ▴ 300
0
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0
replies
3.9k
views
Comment: C: CNV detection using BAM file
6.1 years ago by reza ▴ 300
6
votes
8
replies
3.9k
views
CNV detection using BAM file
CNV BAM
updated 6.1 years ago by ★ 2.8k • written 6.1 years ago by ▴ 300
0
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1
reply
3.9k
views
Comment: C: CNV detection using BAM file
6.1 years ago by reza ▴ 300
0
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1
reply
3.9k
views
Comment: C: CNV detection using BAM file
6.1 years ago by reza ▴ 300
0
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1
reply
2.8k
views
Comment: C: GATK Variant calling
6.3 years ago by reza ▴ 300
0
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2
replies
4.7k
views
Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.3 years ago by reza ▴ 300
0
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0
replies
4.7k
views
Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.3 years ago by reza ▴ 300
0
votes
1
reply
4.7k
views
Comment: C: segmentation fault (core dumped) error when using BWA and BOWTIE
6.3 years ago by reza ▴ 300
0
votes
10
replies
4.7k
views
segmentation fault (core dumped) error when using BWA and BOWTIE
bwa bowtie software error
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 300
4
votes
8
replies
2.9k
views
receive GC-content profile for a given window-size and splitting multi fasta file into separate fasta files by contigs name for running control-free
splitting fasta
updated 6.4 years ago by 141k • written 6.4 years ago by ▴ 300
0
votes
0
replies
2.9k
views
Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
updated 6.4 years ago by 141k • written 6.4 years ago by ▴ 300
0
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2
replies
2.9k
views
Comment: C: receive GC-content profile for a given window-size and splitting multi fasta fil
6.4 years ago by reza ▴ 300
0
votes
0
replies
1.6k
views
how to create target region track for CNV detection using Biomedical genomics workbench
CLC CNV target region
6.4 years ago by reza ▴ 300
5
votes
2
replies
3.2k
views
change fastq header
fastq
updated 6.4 years ago by 161k • written 6.4 years ago by ▴ 300
0
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0
replies
2.2k
views
Comment: C: how to download all bacterial complete genome from RefSeq?
6.5 years ago by reza ▴ 300
3
votes
3
replies
2.2k
views
how to download all bacterial complete genome from RefSeq?
sequence genome bactria
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 300
0
votes
0
replies
2.0k
views
Comment: C: Extract all paired reads from sam file
6.6 years ago by reza ▴ 300
0
votes
0
replies
2.9k
views
Comment: C: Workflow for annotating repeat elements
updated 6.7 years ago by 47k • written 6.7 years ago by ▴ 300
0
votes
1
reply
16k
views
Comment: C: Bioawk - Fasta, Fastq, Sam, Bed, Gff Aware Awk Programming
6.7 years ago by reza ▴ 300
0
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1
reply
2.5k
views
how to extract gene name for non-synonymous SNPs from annotated vcf file for GO analysis
snp non-synonymous GO
6.8 years ago by reza ▴ 300
0
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0
replies
6.5k
views
Comment: C: building database in snpEff
6.8 years ago by reza ▴ 300
1
vote
0
replies
3.1k
views
Comment: C: Should unplaced scaffolds in reference genome be used to map newly sequenced gen
6.8 years ago by reza ▴ 300
0
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1
reply
6.5k
views
Comment: C: building database in snpEff
6.8 years ago by reza ▴ 300
0
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0
replies
6.9k
views
Comment: C: How to determine percentage missing genotypes in VCF/BCF?
6.8 years ago by reza ▴ 300
0
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0
replies
3.0k
views
Comment: C: Functional annotation of SNPs and genes containing nonsynonymous SNPs
6.8 years ago by reza ▴ 300
0
votes
0
replies
3.0k
views
Comment: C: Functional annotation of SNPs and genes containing nonsynonymous SNPs
6.8 years ago by reza ▴ 300
0
votes
1
reply
3.0k
views
Comment: C: Functional annotation of SNPs and genes containing nonsynonymous SNPs
6.8 years ago by reza ▴ 300
6
votes
6
replies
3.0k
views
Functional annotation of SNPs and genes containing nonsynonymous SNPs
SNP gene next-gen ns SNPs indel
6.8 years ago by reza ▴ 300
1
vote
0
replies
3.8k
views
Answer: A: number of functions is more than namber of variants in snpEff's output
6.9 years ago by reza ▴ 300
153 results • Page 2 of 4
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