User: pshubhamoy

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pshubhamoy20
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Posts by pshubhamoy

<prev • 8 results • page 1 of 1 • next >
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Answer: A: clusterProfiler: an R package for comparing biological themes among gene cluster
... where do I get the code for gseaplot? I would like to change the font size of GSEA plot is there a way to do it with existing package? ...
written 4 months ago by pshubhamoy20
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Answer: A: Simplest way to perform GSEA from a weighted list of entrez gene ids
... how do I subset a formal class gseaResults? I have the following Formal class 'gseaResult' [package "DOSE"] with 10 slots ..@ result :'data.frame': 20 obs. of 11 variables: .. ..$ ID : chr [1:20] "rno05200" "rno04010" "rno04151" "rno05166" ... .. ..$ Description : chr [1 ...
written 5 months ago by pshubhamoy20
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Comment: A: Interpreting GSEA results
... Hi , I have a formal class (S4) data like this Formal class 'gseaResult' [package "DOSE"] with 10 slots ..@ result :'data.frame': 20 obs. of 11 variables: .. ..$ ID : chr [1:20] "rno05200" "rno04010" "rno04151" "rno05166" ... .. ..$ Description : chr [1:20] "Pathways in c ...
written 5 months ago by pshubhamoy20
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Answer: A: Rna-Seq Biological Replicates...
... Hi All I have two biological replicates (that's what we can afford at this moment). how do I justify my statistical calculations with edgeR ( seems it does calculation with two replicates but reviewer is arguing with that). can somebody suggest something. thanks ...
written 9 months ago by pshubhamoy20
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Comment: C: gene list for RNA seq
... Hi Steve, good point, yes I am using mm10 ...
written 2.2 years ago by pshubhamoy20
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Answer: A: gene list for RNA seq
... Thanks all, actually I have a RNA-seq data set and I would like to remove all the non-coding genes. is there any available tool for that? ...
written 2.2 years ago by pshubhamoy20
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gene list for RNA seq
... Hi, I need a list of all the protein coding genes from mouse with gene name and corresponding Entrez Gene ID. can somebody help. thanks ...
rna-seq written 2.2 years ago by pshubhamoy20 • updated 2.2 years ago by ebrahimiet40
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RNA seq samtools flagstat
... Hi all I am getting flagstat outputs ( alining with `STAR`) 0 + 69618651 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 0 + 65533095 mapped (-nan%:94.13%) 0 + 69618651 paired in sequencing 0 + 34809894 read1 0 + 34808757 read2 0 + 65506940 properly paired ...
rna-seq written 2.2 years ago by pshubhamoy20 • updated 2.2 years ago by geek_y8.7k

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Popular Question 4 months ago, created a question with more than 1,000 views. For RNA seq samtools flagstat

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