User: edianfranklin

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Posts by edianfranklin

<prev • 7 results • page 1 of 1 • next >
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Comment: C: RNa-seq RPKM data normalization for clustering
... thank you, what about the RPKM data? ...
written 2.6 years ago by edianfranklin0
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Comment: C: RNa-seq RPKM data normalization for clustering
... How the mean-center? I did not understand. Can you explain, please ...
written 2.6 years ago by edianfranklin0
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RNa-seq RPKM data normalization for clustering
... I have a dataset from RNA-seq of genes expression in RPKM, one gene per row and four condition. I need clustering that data with kmeans and hierarchical. My question is: I have to normalize the dataset with transformation to log(x+1) or can use it directly? ...
rpkm rna-seq normalization written 2.6 years ago by edianfranklin0 • updated 2.6 years ago by seta1.1k
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Comment: C: Outliers detection methods for RNA-Seq data
... Why?? I think is significance for my clusters ...
written 2.6 years ago by edianfranklin0
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Comment: C: Outliers detection methods for RNA-Seq data
... With the original data, I get some cluster with a low significance. I want detect and eliminate the outliers from my dataset, for improve the clustering algorithms results ...
written 2.6 years ago by edianfranklin0
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Comment: C: Outliers detection methods for RNA-Seq data
... I will clustering the dataset. In the graphic analysis show a some high values, that values affect the cluster algorithms like k-means. ...
written 2.6 years ago by edianfranklin0
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Outliers detection methods for RNA-Seq data
... I have a RNA-seq dataset with normalization in RPKM. The dataset have 1 gene per row with 4 different experiment condition. I need a detect de outliers values in this dataset. I used de weka filter interquantil Range: A filter for detecting outliers and extreme values based on interquartile ranges ...
rpkm outliers rna-seq written 2.6 years ago by edianfranklin0 • updated 2.5 years ago by Whoknows700

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