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6
votes
4
replies
5.8k
views
miRDeep2 output scores
miRDeep2
NGS
miRNAs
DE
rna-seq
updated 2.2 years ago by
chupalav
• 0 • written 8.2 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
729
views
Comment:
Comment: Insert SNPs in FASTA sequence given position file
2.8 years ago by
Emilio Marmol
▴ 180
0
votes
3
replies
729
views
Insert SNPs in FASTA sequence given position file
snp
python
bed
awk
fasta
updated 2.8 years ago by
Pierre Lindenbaum
164k • written 2.8 years ago by
Emilio Marmol
▴ 180
1
vote
2
replies
4.4k
views
Read Counts from miRDeep2 for posterior DE analysis
mirdeep2
RNA-Seq
DE
read counts
miRNAs
updated 3.0 years ago by
kanika.151
▴ 160 • written 8.2 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
629
views
Tool:
A framework to prioritize miRNA-driven post-transcriptional signals using exonic and intronic regions of RNAseq data
post-transcriptional
miRNA
intron
exon
RNAseq
3.3 years ago by
Emilio Marmol
▴ 180
3
votes
2
replies
800
views
Modify BED with poliregions
bash
awk
BED
updated 5.7 years ago by
Pierre Lindenbaum
164k • written 5.7 years ago by
Emilio Marmol
▴ 180
1
vote
0
replies
8.5k
views
Answer:
A: miRNA differential expression
5.8 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
1.2k
views
Assesing Gene topology and connectivity
RNA-Seq
gene
co-expresion
pathway
topology
5.8 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
1.4k
views
Answer:
A: miRPara for novel miRNA discovery
5.9 years ago by
Emilio Marmol
▴ 180
3
votes
0
replies
12k
views
Answer:
A: STAR or Bowtie for small RNA seq?
updated 5.9 years ago by
ATpoint
86k • written 5.9 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
2.5k
views
Comment:
C: Comparing novel miRNAs from miRDeep2
5.9 years ago by
Emilio Marmol
▴ 180
2
votes
1
reply
12k
views
Comment:
C: STAR or Bowtie for small RNA seq?
5.9 years ago by
Emilio Marmol
▴ 180
1
vote
1
reply
2.5k
views
Answer:
A: Comparing novel miRNAs from miRDeep2
5.9 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
1.7k
views
Answer:
A: novel miRNA identification from sequence
5.9 years ago by
Emilio Marmol
▴ 180
1
vote
1
reply
1.2k
views
RTqPCR Differential Expression with multivariate linnear models
R
limma
linnear model
updated 6.1 years ago by
Kevin Blighe
88k • written 6.1 years ago by
Emilio Marmol
▴ 180
1
vote
3
replies
1.6k
views
VCF sample fields output
vcf
sample
SNP
updated 6.4 years ago by
Biostar
20 • written 6.6 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
1.6k
views
Comment:
C: VCF sample fields output
6.6 years ago by
Emilio Marmol
▴ 180
5
votes
5
replies
3.4k
views
Query Genes within regions
biomaRt
R
bedtools
query
updated 6.6 years ago by
Mike Smith
★ 2.1k • written 6.6 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
1.5k
views
Determining Expressed Probes in Microarray
Microarray
Genes
Probes
Expressed
updated 6.7 years ago by
Biostar
20 • written 6.7 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
1
vote
0
replies
2.6k
views
Comment:
C: differentially expressed miRNA
7.3 years ago by
Emilio Marmol
▴ 180
2
votes
1
reply
2.6k
views
Answer:
A: differentially expressed miRNA
7.3 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
1
vote
1
reply
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
12k
views
Comment:
C: Difference between CPM and RPM for RNA-seq reada quantification
7.3 years ago by
Emilio Marmol
▴ 180
3
votes
18
replies
12k
views
Difference between CPM and RPM for RNA-seq reada quantification
RNA-Seq
miRNAs
CPM
RPM
updated 7.3 years ago by
mforde84
★ 1.4k • written 7.3 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
4.3k
views
Comment:
C: miRNA-mRNA expression correlation
7.8 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
4.3k
views
Comment:
C: miRNA-mRNA expression correlation
7.8 years ago by
Emilio Marmol
▴ 180
2
votes
7
replies
4.3k
views
miRNA-mRNA expression correlation
RNA-Seq
R
miRNA
mRNA
correlation
updated 7.8 years ago by
Benn
8.3k • written 7.8 years ago by
Emilio Marmol
▴ 180
1
vote
1
reply
5.4k
views
Using limma for Differential Expression test
limma
Differential Expression
updated 7.9 years ago by
Biostar
20 • written 8.0 years ago by
Emilio Marmol
▴ 180
0
votes
1
reply
3.0k
views
Trimming adapters from miRNA-seq
RNA-Seq
microRNAs
trimming
adapter
sequencing
8.4 years ago by
Emilio Marmol
▴ 180
0
votes
0
replies
1.6k
views
Comment:
C: Read fragments to trim
8.4 years ago by
Emilio Marmol
▴ 180
0
votes
2
replies
1.6k
views
Read fragments to trim
RNA-Seq
miRNA-seq
cutadapt
trimmomatic
next-gen
8.4 years ago by
Emilio Marmol
▴ 180
0
votes
2
replies
2.7k
views
Comment:
A: Problem guessing what fastq from paired-end rna-seq is forward and what is rever
8.4 years ago by
Emilio Marmol
▴ 180
3
votes
7
replies
2.7k
views
Problem guessing what fastq from paired-end rna-seq is forward and what is reverse
RNA-Seq
next-gen
fastq
forward
reverse
8.4 years ago by
Emilio Marmol
▴ 180
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