Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
1
reply
796
views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
10 months ago by Sara ▴ 270
1
vote
1
reply
388
views
biological replicate in STAR command
RNAseq
updated 10 months ago by 14k • written 10 months ago by ▴ 270
1
vote
1
reply
351
views
filtering gene sets when performing scRNAseq data analysis
scRNA-seq
updated 11 months ago by 44k • written 11 months ago by ▴ 270
2
votes
5
replies
960
views
batch effect correction in 10x genomics single cell sequencing
scRNA-seq
updated 11 months ago by ▴ 70 • written 12 months ago by ▴ 270
2
votes
1
reply
809
views
Condition specific marker detection and problem with the distribution of cells from different samples
scRNAseq
12 months ago by Sara ▴ 270
0
votes
0
replies
727
views
Comment: Comment: labelling the clusters from the CD4 T cell scRNAseq data
13 months ago by Sara ▴ 270
0
votes
3
replies
727
views
labelling the clusters from the CD4 T cell scRNAseq data
scRNAseq
13 months ago by Sara ▴ 270
0
votes
2
replies
640
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 14 months ago by 86k • written 14 months ago by ▴ 270
4
votes
2
replies
3.6k
views
keep getting error while trying to convert Seurat object into a H5ad file
scRNA-seq Seurat
updated 11 months ago by 44k • written 14 months ago by ▴ 270
0
votes
1
reply
1.1k
views
convert matrix files from 10X (single cell) to h5 file
scRNA-seq
updated 14 months ago by ★ 3.0k • written 14 months ago by ▴ 270
2
votes
1
reply
525
views
zero counts for all genes in RNAseq data of Ferret
RNA-seq DGE
updated 14 months ago by 44k • written 14 months ago by ▴ 270
0
votes
1
reply
687
views
Comment: Comment: Correct for different number of cells and individuals in single cell data analys
14 months ago by Sara ▴ 270
0
votes
3
replies
687
views
Correct for different number of cells and individuals in single cell data analysis
scRNA-seq
updated 14 months ago by 44k • written 14 months ago by ▴ 270
3
votes
1
reply
1.1k
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq Seurat
updated 16 months ago by 44k • written 16 months ago by ▴ 270
1
vote
2
replies
1.5k
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 16 months ago by ▴ 100 • written 16 months ago by ▴ 270
5
votes
9
replies
1.8k
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE RNAseq
updated 18 months ago by 21k • written 18 months ago by ▴ 270
0
votes
1
reply
1.8k
views
Comment: Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
18 months ago by Sara ▴ 270
0
votes
1
reply
1.8k
views
Comment: Comment: loosing many genes while doing DGE on the RNAseq data due to read count threshol
18 months ago by Sara ▴ 270
0
votes
1
reply
611
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 18 months ago by 4.5k • written 18 months ago by ▴ 270
0
votes
1
reply
713
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 19 months ago by 148k • written 19 months ago by ▴ 270
2
votes
3
replies
1.7k
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 19 months ago by 44k • written 19 months ago by ▴ 270
1
vote
1
reply
626
views
making metadata file for differential gene expression analysis
RNAseq
updated 19 months ago by ★ 2.0k • written 19 months ago by ▴ 270
0
votes
0
replies
876
views
Comment: Comment: modelling time series data from different individuals
20 months ago by Sara ▴ 270
0
votes
2
replies
876
views
modelling time series data from different individuals
modeling
20 months ago by Sara ▴ 270
0
votes
1
reply
1.0k
views
issue with merging single cell data files
scRNAseq
updated 22 months ago by ▴ 170 • written 22 months ago by ▴ 270
0
votes
1
reply
859
views
Comment: Comment: how to find the Allele Number of specific variant from gnomAD
2.4 years ago by Sara ▴ 270
1
vote
3
replies
859
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 2.4 years ago by 164k • written 2.5 years ago by ▴ 270
0
votes
0
replies
482
views
no read counts per allele while using gatk ASEReadCounter
GATK
2.6 years ago by Sara ▴ 270
0
votes
0
replies
1.2k
views
Comment: Comment: Unable to access error while running docker container for GATK
2.6 years ago by Sara ▴ 270
0
votes
1
reply
1.2k
views
Comment: Comment: Unable to access error while running docker container for GATK
2.6 years ago by Sara ▴ 270
2
votes
4
replies
1.2k
views
Unable to access error while running docker container for GATK
gatk docker
2.6 years ago by Sara ▴ 270
1
vote
3
replies
1.3k
views
Getting fastq files as the output of bowtie2
bowtie2
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 270
3
votes
7
replies
3.3k
views
downloading human rRNA.fasta
rRNA
updated 13 months ago by • 0 • written 2.7 years ago by ▴ 270
0
votes
0
replies
491
views
make sashimi plot on the IGV using cram file
sashimi plot
2.7 years ago by Sara ▴ 270
5
votes
3
replies
2.9k
views
determine sex ratio from the bam file
bam
updated 2.7 years ago by ▴ 30 • written 2.7 years ago by ▴ 270
4
votes
2
replies
726
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 2.7 years ago by 86k • written 2.7 years ago by ▴ 270
0
votes
2
replies
628
views
download sequencing data from public domain
fastq
updated 2.7 years ago by ▴ 240 • written 2.7 years ago by ▴ 270
0
votes
0
replies
1.7k
views
Comment: Comment: weird alignment results for RNAseq data
2.7 years ago by Sara ▴ 270
0
votes
1
reply
1.7k
views
Comment: Comment: weird alignment results for RNAseq data
2.7 years ago by Sara ▴ 270
0
votes
2
replies
1.7k
views
Comment: Comment: weird alignment results for RNAseq data
2.7 years ago by Sara ▴ 270
0
votes
1
reply
1.7k
views
Comment: Comment: weird alignment results for RNAseq data
2.7 years ago by Sara ▴ 270
1
vote
12
replies
1.7k
views
weird alignment results for RNAseq data
hisat2 star
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 270
2
votes
2
replies
1.1k
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 2.7 years ago by 23k • written 2.7 years ago by ▴ 270
2
votes
2
replies
740
views
monoallelic expression analysis
expression monoallelic analysis
updated 2.7 years ago by ★ 3.0k • written 2.7 years ago by ▴ 270
1
vote
1
reply
490
views
filtering out 0/0 calls from VCF file
VCF
updated 2.8 years ago by 164k • written 2.8 years ago by ▴ 270
4
votes
4
replies
977
views
VCF file comparison and plotting them
vcf
updated 2.8 years ago by 164k • written 2.8 years ago by ▴ 270
0
votes
2
replies
1.7k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 3.0 years ago by 14k • written 3.0 years ago by ▴ 270
1
vote
1
reply
1.0k
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 3.0 years ago by ★ 1.8k • written 3.0 years ago by ▴ 270
4
votes
3
replies
1.4k
views
novel AS events detection from RNA seq
Splicing Alternative
updated 3.0 years ago by ▴ 10 • written 3.0 years ago by ▴ 270
3
votes
4
replies
1.1k
views
correct fastq files for the expression analysis
cram
updated 3.0 years ago by 21k • written 3.0 years ago by ▴ 270
147 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6