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1
vote
1
reply
217
views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
24 days ago by
Sara
▴ 240
1
vote
1
reply
224
views
biological replicate in STAR command
RNAseq
updated 29 days ago by
swbarnes2
14k • written 4 weeks ago by
Sara
▴ 240
1
vote
1
reply
201
views
filtering gene sets when performing scRNAseq data analysis
scRNA-seq
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
Sara
▴ 240
2
votes
5
replies
444
views
batch effect correction in 10x genomics single cell sequencing
scRNA-seq
updated 9 weeks ago by
QX
• 0 • written 10 weeks ago by
Sara
▴ 240
2
votes
1
reply
609
views
Condition specific marker detection and problem with the distribution of cells from different samples
scRNAseq
12 weeks ago by
Sara
▴ 240
0
votes
0
replies
428
views
Comment:
Comment: labelling the clusters from the CD4 T cell scRNAseq data
4 months ago by
Sara
▴ 240
0
votes
3
replies
428
views
labelling the clusters from the CD4 T cell scRNAseq data
scRNAseq
4 months ago by
Sara
▴ 240
0
votes
2
replies
434
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 4 months ago by
ATpoint
81k • written 4 months ago by
Sara
▴ 240
4
votes
2
replies
1.2k
views
keep getting error while trying to convert Seurat object into a H5ad file
scRNA-seq
Seurat
updated 9 weeks ago by
Ram
43k • written 4 months ago by
Sara
▴ 240
0
votes
1
reply
539
views
convert matrix files from 10X (single cell) to h5 file
scRNA-seq
updated 4 months ago by
bk11
★ 2.2k • written 4 months ago by
Sara
▴ 240
2
votes
1
reply
350
views
zero counts for all genes in RNAseq data of Ferret
RNA-seq
DGE
updated 4 months ago by
Ram
43k • written 4 months ago by
Sara
▴ 240
0
votes
1
reply
430
views
Comment:
Comment: Correct for different number of cells and individuals in single cell data analys
4 months ago by
Sara
▴ 240
0
votes
3
replies
430
views
Correct for different number of cells and individuals in single cell data analysis
scRNA-seq
updated 4 months ago by
Ram
43k • written 4 months ago by
Sara
▴ 240
0
votes
1
reply
668
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq
Seurat
updated 6 months ago by
Ram
43k • written 6 months ago by
Sara
▴ 240
0
votes
2
replies
916
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 6 months ago by
synat.keam
▴ 100 • written 6 months ago by
Sara
▴ 240
5
votes
9
replies
1.1k
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE
RNAseq
updated 8 months ago by
i.sudbery
18k • written 8 months ago by
Sara
▴ 240
0
votes
1
reply
1.1k
views
Comment:
Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
8 months ago by
Sara
▴ 240
0
votes
1
reply
1.1k
views
Comment:
Comment: loosing many genes while doing DGE on the RNAseq data due to read count threshol
8 months ago by
Sara
▴ 240
0
votes
1
reply
480
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 9 months ago by
LauferVA
4.1k • written 9 months ago by
Sara
▴ 240
0
votes
1
reply
480
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 9 months ago by
GenoMax
140k • written 9 months ago by
Sara
▴ 240
2
votes
3
replies
1.1k
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 9 months ago by
Ram
43k • written 9 months ago by
Sara
▴ 240
1
vote
1
reply
445
views
making metadata file for differential gene expression analysis
RNAseq
updated 10 months ago by
Basti
★ 1.9k • written 10 months ago by
Sara
▴ 240
0
votes
0
replies
629
views
Comment:
Comment: modelling time series data from different individuals
10 months ago by
Sara
▴ 240
0
votes
2
replies
629
views
modelling time series data from different individuals
modeling
10 months ago by
Sara
▴ 240
0
votes
1
reply
704
views
issue with merging single cell data files
scRNAseq
updated 12 months ago by
bompipi95
▴ 150 • written 12 months ago by
Sara
▴ 240
0
votes
1
reply
647
views
Comment:
Comment: how to find the Allele Number of specific variant from gnomAD
20 months ago by
Sara
▴ 240
1
vote
3
replies
647
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 20 months ago by
Pierre Lindenbaum
160k • written 20 months ago by
Sara
▴ 240
0
votes
0
replies
360
views
no read counts per allele while using gatk ASEReadCounter
GATK
22 months ago by
Sara
▴ 240
0
votes
0
replies
851
views
Comment:
Comment: Unable to access error while running docker container for GATK
22 months ago by
Sara
▴ 240
0
votes
1
reply
851
views
Comment:
Comment: Unable to access error while running docker container for GATK
22 months ago by
Sara
▴ 240
2
votes
4
replies
851
views
Unable to access error while running docker container for GATK
gatk
docker
22 months ago by
Sara
▴ 240
0
votes
3
replies
949
views
Getting fastq files as the output of bowtie2
bowtie2
updated 22 months ago by
cpad0112
21k • written 22 months ago by
Sara
▴ 240
3
votes
7
replies
2.2k
views
downloading human rRNA.fasta
rRNA
updated 3 months ago by
hector3500
• 0 • written 22 months ago by
Sara
▴ 240
0
votes
0
replies
367
views
make sashimi plot on the IGV using cram file
sashimi
plot
22 months ago by
Sara
▴ 240
4
votes
3
replies
2.0k
views
determine sex ratio from the bam file
bam
updated 23 months ago by
helrick
▴ 30 • written 23 months ago by
Sara
▴ 240
4
votes
2
replies
531
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 23 months ago by
ATpoint
81k • written 23 months ago by
Sara
▴ 240
0
votes
2
replies
480
views
download sequencing data from public domain
fastq
updated 23 months ago by
patrickdm
▴ 230 • written 23 months ago by
Sara
▴ 240
0
votes
0
replies
1.2k
views
Comment:
Comment: weird alignment results for RNAseq data
23 months ago by
Sara
▴ 240
0
votes
1
reply
1.2k
views
Comment:
Comment: weird alignment results for RNAseq data
23 months ago by
Sara
▴ 240
0
votes
2
replies
1.2k
views
Comment:
Comment: weird alignment results for RNAseq data
23 months ago by
Sara
▴ 240
0
votes
1
reply
1.2k
views
Comment:
Comment: weird alignment results for RNAseq data
23 months ago by
Sara
▴ 240
1
vote
12
replies
1.2k
views
weird alignment results for RNAseq data
hisat2
star
updated 23 months ago by
cpad0112
21k • written 23 months ago by
Sara
▴ 240
2
votes
2
replies
780
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 23 months ago by
Jeremy Leipzig
22k • written 23 months ago by
Sara
▴ 240
2
votes
2
replies
578
views
monoallelic expression analysis
expression
monoallelic
analysis
updated 23 months ago by
Fabio Marroni
★ 3.0k • written 23 months ago by
Sara
▴ 240
1
vote
1
reply
371
views
filtering out 0/0 calls from VCF file
VCF
updated 24 months ago by
Pierre Lindenbaum
160k • written 24 months ago by
Sara
▴ 240
4
votes
4
replies
716
views
VCF file comparison and plotting them
vcf
updated 24 months ago by
Pierre Lindenbaum
160k • written 24 months ago by
Sara
▴ 240
0
votes
2
replies
1.5k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 2.2 years ago by
swbarnes2
14k • written 2.2 years ago by
Sara
▴ 240
1
vote
1
reply
796
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 2.2 years ago by
jv
★ 1.7k • written 2.2 years ago by
Sara
▴ 240
3
votes
3
replies
1.1k
views
novel AS events detection from RNA seq
Splicing
Alternative
updated 2.2 years ago by
beaferbl
▴ 10 • written 2.2 years ago by
Sara
▴ 240
3
votes
4
replies
861
views
correct fastq files for the expression analysis
cram
updated 2.2 years ago by
cpad0112
21k • written 2.2 years ago by
Sara
▴ 240
147 results • Page
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