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Comment: Comment: how to find the Allele Number of specific variant from gnomAD
6 months ago by Sara ▴ 220
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3
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376
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how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 6 months ago by 152k • written 6 months ago by ▴ 220
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0
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178
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no read counts per allele while using gatk ASEReadCounter
GATK
8 months ago by Sara ▴ 220
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0
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464
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Comment: Comment: Unable to access error while running docker container for GATK
8 months ago by Sara ▴ 220
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1
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464
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Comment: Comment: Unable to access error while running docker container for GATK
8 months ago by Sara ▴ 220
2
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4
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464
views
Unable to access error while running docker container for GATK
gatk docker
8 months ago by Sara ▴ 220
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3
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449
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Getting fastq files as the output of bowtie2
bowtie2
updated 8 months ago by 21k • written 8 months ago by ▴ 220
3
votes
6
replies
700
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downloading human rRNA.fasta
rRNA
updated 8 months ago by 68k • written 8 months ago by ▴ 220
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0
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191
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make sashimi plot on the IGV using cram file
sashimi plot
8 months ago by Sara ▴ 220
4
votes
3
replies
820
views
determine sex ratio from the bam file
bam
updated 9 months ago by ▴ 30 • written 9 months ago by ▴ 220
3
votes
2
replies
280
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Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 9 months ago by 68k • written 9 months ago by ▴ 220
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2
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253
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download sequencing data from public domain
fastq
updated 9 months ago by ▴ 220 • written 9 months ago by ▴ 220
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0
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627
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Comment: Comment: weird alignment results for RNAseq data
9 months ago by Sara ▴ 220
0
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1
reply
627
views
Comment: Comment: weird alignment results for RNAseq data
9 months ago by Sara ▴ 220
0
votes
2
replies
627
views
Comment: Comment: weird alignment results for RNAseq data
9 months ago by Sara ▴ 220
0
votes
1
reply
627
views
Comment: Comment: weird alignment results for RNAseq data
9 months ago by Sara ▴ 220
1
vote
12
replies
627
views
weird alignment results for RNAseq data
hisat2 star
updated 9 months ago by 21k • written 9 months ago by ▴ 220
2
votes
2
replies
383
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 9 months ago by 21k • written 9 months ago by ▴ 220
2
votes
2
replies
332
views
monoallelic expression analysis
expression monoallelic analysis
updated 9 months ago by ★ 2.9k • written 9 months ago by ▴ 220
1
vote
1
reply
213
views
filtering out 0/0 calls from VCF file
VCF
updated 10 months ago by 152k • written 10 months ago by ▴ 220
4
votes
4
replies
350
views
VCF file comparison and plotting them
vcf
updated 10 months ago by 152k • written 10 months ago by ▴ 220
0
votes
2
replies
1.0k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 12 months ago by 13k • written 12 months ago by ▴ 220
1
vote
1
reply
404
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 13 months ago by ▴ 780 • written 13 months ago by ▴ 220
3
votes
3
replies
606
views
novel AS events detection from RNA seq
Splicing Alternative
updated 12 months ago by ▴ 10 • written 13 months ago by ▴ 220
3
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4
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539
views
correct fastq files for the expression analysis
cram
updated 13 months ago by 21k • written 13 months ago by ▴ 220
0
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2
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770
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Comment: Comment: Problem when generating hg38 genome indexes using STAR
13 months ago by Sara ▴ 220
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2
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770
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Comment: Comment: Problem when generating hg38 genome indexes using STAR
13 months ago by Sara ▴ 220
0
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6
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770
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Problem when generating hg38 genome indexes using STAR
STAR
updated 13 months ago by 68k • written 13 months ago by ▴ 220
0
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1
reply
998
views
Comment: Comment: error when indexing transcroptome using salmon
13 months ago by Sara ▴ 220
0
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1
reply
998
views
Comment: Comment: error when indexing transcroptome using salmon
13 months ago by Sara ▴ 220
0
votes
1
reply
998
views
Comment: Comment: error when indexing transcroptome using salmon
13 months ago by Sara ▴ 220
3
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8
replies
998
views
error when indexing transcroptome using salmon
Transcriptome salmon
updated 13 months ago by 5.8k • written 13 months ago by ▴ 220
0
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0
replies
215
views
detect the alternative contigs from the RNAseq data
alternative contigs
14 months ago by Sara ▴ 220
0
votes
1
reply
681
views
Comment: Comment: obtaining unique identifier for a sample from fastq files
15 months ago by Sara ▴ 220
0
votes
4
replies
681
views
obtaining unique identifier for a sample from fastq files
fastq
15 months ago by Sara ▴ 220
1
vote
1
reply
383
views
extract specific information from fastq and sam files
sequencing
updated 16 months ago by 125k • written 16 months ago by ▴ 220
4
votes
2
replies
615
views
DNA to peptide translation and adding to csv file
translation
updated 16 months ago by 152k • written 16 months ago by ▴ 220
3
votes
3
replies
431
views
best tool for the pipeline wrapper
pipeline
updated 17 months ago by 96k • written 17 months ago by ▴ 220
0
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0
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1.1k
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Comment: Comment: collapsing pacbio reads into a single sequence
18 months ago by Sara ▴ 220
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1
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1.1k
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Comment: Comment: collapsing pacbio reads into a single sequence
18 months ago by Sara ▴ 220
2
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5
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1.1k
views
collapsing pacbio reads into a single sequence
pacbio
18 months ago by Sara ▴ 220
2
votes
2
replies
727
views
Available annotation file for the PacBio Iso-seq data
sequencing
updated 19 months ago by 125k • written 3.1 years ago by ▴ 220
3
votes
3
replies
702
views
quick way of contamination identification from fastq file
alignment
updated 20 months ago by ★ 1.2k • written 20 months ago by ▴ 220
0
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1
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821
views
Comment: Comment: problem with SNPs and Indels detectiong useng WGS data
22 months ago by Sara ▴ 220
1
vote
4
replies
821
views
problem with SNPs and Indels detectiong useng WGS data
WGS
updated 22 months ago by 37k • written 22 months ago by ▴ 220
0
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0
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373
views
Comment: Comment: low alignment rate of methyl-seq data
24 months ago by Sara ▴ 220
1
vote
2
replies
373
views
low alignment rate of methyl-seq data
alignment
24 months ago by Sara ▴ 220
0
votes
0
replies
385
views
methylseq data analysis using bismark and low alignment rate
next-gen
2.1 years ago by Sara ▴ 220
4
votes
6
replies
1.4k
views
UMI and the reason of high duplicate rate
rna-seq
updated 2.3 years ago by 13k • written 2.3 years ago by ▴ 220
0
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2
replies
1.4k
views
Comment: A: UMI and the reason of high duplicate rate
2.3 years ago by Sara ▴ 220
122 results • Page 1 of 3
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