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0
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0
replies
525
views
methylseq data analysis using bismark and low alignment rate
next-gen
3.3 years ago by Sara ▴ 240
4
votes
6
replies
2.1k
views
UMI and the reason of high duplicate rate
rna-seq
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 240
1
vote
1
reply
752
views
compare expression for 1 gene between more than 2 samples
RNA-Seq
updated 3.5 years ago by • 0 • written 3.6 years ago by ▴ 240
5
votes
2
replies
5.6k
views
CIBERSORT input file format
RNA-Seq CIBERSORT
updated 3.6 years ago by ▴ 30 • written 4.1 years ago by ▴ 240
2
votes
2
replies
1.1k
views
correct order for pathway analysis
gene
3.6 years ago by Sara ▴ 240
1
vote
1
reply
1.4k
views
a lot of missing variants when using DRAGEN for variant calling
next-gen
3.6 years ago by Sara ▴ 240
0
votes
1
reply
1.9k
views
comparing 2 VCF files
SNP
3.7 years ago by Sara ▴ 240
0
votes
2
replies
816
views
building container in singularity
software error
3.7 years ago by Sara ▴ 240
3
votes
4
replies
2.2k
views
VCF evaluation using RTG.jar vcfeval
SNP
updated 3.8 years ago by ★ 1.6k • written 3.8 years ago by ▴ 240
1
vote
2
replies
852
views
missing file in rtg-tools
SNP
3.8 years ago by Sara ▴ 240
0
votes
2
replies
1.8k
views
difference between DRAGEN and GATK
genome
3.8 years ago by Sara ▴ 240
1
vote
4
replies
965
views
how can I find the download link for a famous dataset
sequencing
3.8 years ago by Sara ▴ 240
0
votes
2
replies
767
views
identifying the command for creating VCF file
SNP
updated 3.8 years ago by ★ 3.2k • written 3.8 years ago by ▴ 240
1
vote
0
replies
522
views
evaluate the quality of VCF files for CNVs
sequencing genome
updated 3.8 years ago by 161k • written 3.8 years ago by ▴ 240
0
votes
3
replies
2.1k
views
read count normalization for spike
RNA-Seq
updated 3.9 years ago by 20 • written 7.1 years ago by ▴ 240
1
vote
1
reply
1.4k
views
correct order of cut off and normalization in RNAseq data
RNA-Seq
updated 4.0 years ago by 81k • written 4.0 years ago by ▴ 240
0
votes
2
replies
521
views
legal issues about running the analysis on the cloud
next-gen
updated 4.1 years ago by 104k • written 4.1 years ago by ▴ 240
0
votes
2
replies
1.0k
views
tool for the new protocol of WES for CNV detection
next-gen
updated 4.2 years ago by ★ 2.9k • written 4.2 years ago by ▴ 240
3
votes
2
replies
772
views
uploading the files to the cloud
RNA-Seq
updated 4.2 years ago by 35k • written 4.2 years ago by ▴ 240
0
votes
5
replies
792
views
location of integrated vector in the genome in CRISPR experiment
genome
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 240
0
votes
1
reply
496
views
INDELs frequency at the on-target site in CRISPR experiment
genome
4.2 years ago by Sara ▴ 240
3
votes
3
replies
2.4k
views
create consensus sequence from bam file
alignment
4.2 years ago by Sara ▴ 240
1
vote
1
reply
611
views
tool for the structural variants in the off target sites
next-gen
4.2 years ago by Sara ▴ 240
0
votes
2
replies
1.1k
views
database for mouse tumor supressor genes and oncogenes
gene
4.3 years ago by Sara ▴ 240
0
votes
2
replies
858
views
cloud platform selection for genomics
next-gen
4.3 years ago by Sara ▴ 240
1
vote
1
reply
923
views
getting different number of reads in R1 and R2 after using UMItools
next-gen
updated 4.3 years ago by 19k • written 4.3 years ago by ▴ 240
0
votes
3
replies
597
views
Getting the coordinates of targeted locations by sgRNAs
next-gen
4.3 years ago by Sara ▴ 240
1
vote
1
reply
559
views
plot the number of variations within a certain window
SNP next-gen
4.3 years ago by Sara ▴ 240
5
votes
2
replies
1.1k
views
predicting 3D structure of protein from DNA sequence
next-gen
4.4 years ago by Sara ▴ 240
4
votes
10
replies
1.3k
views
merging VCF files or not
SNP vcf
updated 4.4 years ago by • 0 • written 4.6 years ago by ▴ 240
0
votes
1
reply
592
views
important alignment parameters
alignment
updated 4.4 years ago by ★ 5.8k • written 4.5 years ago by ▴ 240
13
votes
9
replies
5.1k
views
tool to analysis bulk RNAseq data with UMIs
next-gen
updated 4.5 years ago by 19k • written 4.5 years ago by ▴ 240
3
votes
4
replies
1.2k
views
Extracting data from edgeR R package
R edgeR
updated 4.6 years ago by 11k • written 4.6 years ago by ▴ 240
8
votes
3
replies
840
views
How safe the UCSC is for patients data
RNA-Seq
updated 4.7 years ago by 81k • written 4.7 years ago by ▴ 240
3
votes
3
replies
2.7k
views
getting error when indexing bam files
genome alignment
updated 4.8 years ago by 14k • written 4.8 years ago by ▴ 240
0
votes
0
replies
771
views
Comparing 2 methods to identify CNVs using WGS data
genome
4.9 years ago by Sara ▴ 240
0
votes
6
replies
1.6k
views
visualizing the Shallow whole genome sequencing on the UCSC
genome
updated 4.9 years ago by ★ 3.4k • written 4.9 years ago by ▴ 240
0
votes
2
replies
2.2k
views
frequency of each nucleotide at each position in sequence
RNA-Seq
written 6.6 years ago by ▴ 240
1
vote
1
reply
775
views
read counts per chromosome arm
genome alignment
updated 4.9 years ago by 161k • written 4.9 years ago by ▴ 240
4
votes
3
replies
2.5k
views
DE analysis using single cell RNA-seq data
rna-seq
updated 5.1 years ago by ▴ 450 • written 7.0 years ago by ▴ 240
1
vote
4
replies
1.7k
views
how to get read density for the first 1000 nt of each transcript
sequence next-gen RNA-Seq
updated 5.9 years ago by 104k • written 7.7 years ago by ▴ 240
1
vote
8
replies
3.9k
views
error in macs2 usage
next-gen
updated 6.2 years ago by • 0 • written 7.3 years ago by ▴ 240
2
votes
6
replies
1.6k
views
problem with the alignment of RNAseq data
RNA-Seq
updated 6.4 years ago by 20 • written 6.5 years ago by ▴ 240
0
votes
2
replies
1.2k
views
removing a part of sequence of all genes
RNA-Seq
updated 6.5 years ago by ▴ 660 • written 6.5 years ago by ▴ 240
0
votes
4
replies
2.1k
views
counting the reads that mapped to a part of transcriptome
RNA-Seq
updated 6.5 years ago by ▴ 660 • written 6.5 years ago by ▴ 240
1
vote
4
replies
1.3k
views
isolating in frame reads from a file
RNA-Seq
updated 6.5 years ago by ▴ 660 • written 6.5 years ago by ▴ 240
1
vote
4
replies
3.7k
views
how to visualize the RNAseq data on IGV
RNA-Seq
6.5 years ago by Sara ▴ 240
0
votes
1
reply
2.9k
views
IGV vs UCSC and comparison
RNA-Seq
6.6 years ago by Sara ▴ 240
1
vote
1
reply
1.0k
views
problem with old UCSC browser links
RNA-Seq
6.6 years ago by Sara ▴ 240
1
vote
2
replies
1.5k
views
tools to get the coverage
RNA-Seq
6.7 years ago by Sara ▴ 240
107 results • Page 2 of 3
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