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0
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0
replies
627
views
methylseq data analysis using bismark and low alignment rate
next-gen
4.2 years ago by Sara ▴ 270
4
votes
6
replies
2.6k
views
UMI and the reason of high duplicate rate
rna-seq
updated 4.5 years ago by 14k • written 4.5 years ago by ▴ 270
1
vote
1
reply
907
views
compare expression for 1 gene between more than 2 samples
RNA-Seq
updated 4.5 years ago by • 0 • written 4.5 years ago by ▴ 270
5
votes
2
replies
6.6k
views
CIBERSORT input file format
RNA-Seq CIBERSORT
updated 4.5 years ago by ▴ 30 • written 5.0 years ago by ▴ 270
2
votes
2
replies
1.3k
views
correct order for pathway analysis
gene
4.5 years ago by Sara ▴ 270
1
vote
1
reply
1.6k
views
a lot of missing variants when using DRAGEN for variant calling
next-gen
4.6 years ago by Sara ▴ 270
0
votes
1
reply
2.1k
views
comparing 2 VCF files
SNP
4.6 years ago by Sara ▴ 270
0
votes
2
replies
964
views
building container in singularity
software error
4.6 years ago by Sara ▴ 270
3
votes
4
replies
2.8k
views
VCF evaluation using RTG.jar vcfeval
SNP
updated 4.7 years ago by ★ 1.6k • written 4.7 years ago by ▴ 270
1
vote
2
replies
1.0k
views
missing file in rtg-tools
SNP
4.7 years ago by Sara ▴ 270
0
votes
2
replies
2.2k
views
difference between DRAGEN and GATK
genome
4.7 years ago by Sara ▴ 270
1
vote
4
replies
1.3k
views
how can I find the download link for a famous dataset
sequencing
4.7 years ago by Sara ▴ 270
0
votes
2
replies
905
views
identifying the command for creating VCF file
SNP
updated 4.7 years ago by ★ 3.3k • written 4.7 years ago by ▴ 270
1
vote
0
replies
595
views
evaluate the quality of VCF files for CNVs
sequencing genome
updated 4.8 years ago by 165k • written 4.8 years ago by ▴ 270
0
votes
3
replies
2.4k
views
read count normalization for spike
RNA-Seq
updated 4.9 years ago by 20 • written 8.0 years ago by ▴ 270
1
vote
1
reply
1.6k
views
correct order of cut off and normalization in RNAseq data
RNA-Seq
updated 4.9 years ago by 87k • written 4.9 years ago by ▴ 270
0
votes
2
replies
629
views
legal issues about running the analysis on the cloud
next-gen
updated 5.0 years ago by 105k • written 5.0 years ago by ▴ 270
0
votes
2
replies
1.3k
views
tool for the new protocol of WES for CNV detection
next-gen
updated 5.1 years ago by ★ 3.0k • written 5.1 years ago by ▴ 270
3
votes
2
replies
998
views
uploading the files to the cloud
RNA-Seq
updated 5.1 years ago by 35k • written 5.1 years ago by ▴ 270
0
votes
5
replies
1.0k
views
location of integrated vector in the genome in CRISPR experiment
genome
updated 5.1 years ago by 15k • written 5.1 years ago by ▴ 270
0
votes
1
reply
606
views
INDELs frequency at the on-target site in CRISPR experiment
genome
5.1 years ago by Sara ▴ 270
3
votes
3
replies
2.8k
views
create consensus sequence from bam file
alignment
5.1 years ago by Sara ▴ 270
1
vote
1
reply
679
views
tool for the structural variants in the off target sites
next-gen
5.2 years ago by Sara ▴ 270
0
votes
2
replies
1.3k
views
database for mouse tumor supressor genes and oncogenes
gene
5.2 years ago by Sara ▴ 270
0
votes
2
replies
963
views
cloud platform selection for genomics
next-gen
5.2 years ago by Sara ▴ 270
1
vote
1
reply
1.1k
views
getting different number of reads in R1 and R2 after using UMItools
next-gen
updated 5.2 years ago by 21k • written 5.2 years ago by ▴ 270
0
votes
3
replies
727
views
Getting the coordinates of targeted locations by sgRNAs
next-gen
5.2 years ago by Sara ▴ 270
1
vote
1
reply
643
views
plot the number of variations within a certain window
SNP next-gen
5.2 years ago by Sara ▴ 270
5
votes
2
replies
1.4k
views
predicting 3D structure of protein from DNA sequence
next-gen
5.3 years ago by Sara ▴ 270
4
votes
10
replies
1.8k
views
merging VCF files or not
SNP vcf
updated 5.4 years ago by • 0 • written 5.5 years ago by ▴ 270
0
votes
1
reply
834
views
important alignment parameters
alignment
updated 5.4 years ago by ★ 7.3k • written 5.4 years ago by ▴ 270
13
votes
9
replies
6.1k
views
tool to analysis bulk RNAseq data with UMIs
next-gen
updated 5.4 years ago by 21k • written 5.4 years ago by ▴ 270
3
votes
4
replies
1.5k
views
Extracting data from edgeR R package
R edgeR
updated 5.5 years ago by 12k • written 5.5 years ago by ▴ 270
8
votes
3
replies
1.1k
views
How safe the UCSC is for patients data
RNA-Seq
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 270
3
votes
3
replies
3.3k
views
getting error when indexing bam files
genome alignment
updated 5.8 years ago by 14k • written 5.8 years ago by ▴ 270
0
votes
0
replies
845
views
Comparing 2 methods to identify CNVs using WGS data
genome
5.8 years ago by Sara ▴ 270
0
votes
6
replies
2.0k
views
visualizing the Shallow whole genome sequencing on the UCSC
genome
updated 5.8 years ago by ★ 3.4k • written 5.8 years ago by ▴ 270
0
votes
2
replies
2.4k
views
frequency of each nucleotide at each position in sequence
RNA-Seq
written 7.5 years ago by ▴ 270
1
vote
1
reply
919
views
read counts per chromosome arm
genome alignment
updated 5.8 years ago by 165k • written 5.8 years ago by ▴ 270
4
votes
3
replies
2.8k
views
DE analysis using single cell RNA-seq data
rna-seq
updated 6.1 years ago by ▴ 450 • written 7.9 years ago by ▴ 270
1
vote
4
replies
2.0k
views
how to get read density for the first 1000 nt of each transcript
sequence next-gen RNA-Seq
updated 6.8 years ago by 105k • written 8.7 years ago by ▴ 270
1
vote
8
replies
4.6k
views
error in macs2 usage
next-gen
updated 7.1 years ago by • 0 • written 8.2 years ago by ▴ 270
2
votes
6
replies
1.8k
views
problem with the alignment of RNAseq data
RNA-Seq
updated 7.3 years ago by 20 • written 7.5 years ago by ▴ 270
0
votes
2
replies
1.4k
views
removing a part of sequence of all genes
RNA-Seq
updated 7.4 years ago by ▴ 660 • written 7.4 years ago by ▴ 270
0
votes
4
replies
2.5k
views
counting the reads that mapped to a part of transcriptome
RNA-Seq
updated 7.4 years ago by ▴ 660 • written 7.4 years ago by ▴ 270
1
vote
4
replies
1.6k
views
isolating in frame reads from a file
RNA-Seq
updated 7.4 years ago by ▴ 660 • written 7.4 years ago by ▴ 270
1
vote
4
replies
4.0k
views
how to visualize the RNAseq data on IGV
RNA-Seq
7.5 years ago by Sara ▴ 270
0
votes
1
reply
3.2k
views
IGV vs UCSC and comparison
RNA-Seq
7.5 years ago by Sara ▴ 270
1
vote
1
reply
1.1k
views
problem with old UCSC browser links
RNA-Seq
7.5 years ago by Sara ▴ 270
1
vote
2
replies
1.6k
views
tools to get the coverage
RNA-Seq
7.6 years ago by Sara ▴ 270
107 results • Page 2 of 3
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