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1
vote
1
reply
574
views
compare expression for 1 gene between more than 2 samples
RNA-Seq
updated 2.3 years ago by • 0 • written 2.4 years ago by ▴ 220
5
votes
2
replies
3.8k
views
CIBERSORT input file format
RNA-Seq CIBERSORT
updated 2.4 years ago by ▴ 30 • written 2.8 years ago by ▴ 220
2
votes
2
replies
794
views
correct order for pathway analysis
gene
2.4 years ago by Sara ▴ 220
1
vote
1
reply
1.1k
views
a lot of missing variants when using DRAGEN for variant calling
next-gen
2.4 years ago by Sara ▴ 220
0
votes
1
reply
1.4k
views
comparing 2 VCF files
SNP
2.4 years ago by Sara ▴ 220
0
votes
2
replies
644
views
building container in singularity
software error
2.5 years ago by Sara ▴ 220
2
votes
4
replies
1.5k
views
VCF evaluation using RTG.jar vcfeval
SNP
updated 2.5 years ago by ★ 1.6k • written 2.6 years ago by ▴ 220
1
vote
2
replies
584
views
missing file in rtg-tools
SNP
2.6 years ago by Sara ▴ 220
0
votes
2
replies
1.2k
views
difference between DRAGEN and GATK
genome
2.6 years ago by Sara ▴ 220
0
votes
0
replies
667
views
Comment: C: how can I find the download link for a famous dataset
2.6 years ago by Sara ▴ 220
0
votes
1
reply
667
views
Comment: C: how can I find the download link for a famous dataset
2.6 years ago by Sara ▴ 220
1
vote
4
replies
667
views
how can I find the download link for a famous dataset
sequencing
2.6 years ago by Sara ▴ 220
0
votes
2
replies
564
views
identifying the command for creating VCF file
SNP
updated 2.6 years ago by ★ 3.1k • written 2.6 years ago by ▴ 220
1
vote
0
replies
413
views
evaluate the quality of VCF files for CNVs
sequencing genome
updated 2.6 years ago by 152k • written 2.6 years ago by ▴ 220
0
votes
3
replies
1.9k
views
read count normalization for spike
RNA-Seq
updated 2.7 years ago by 20 • written 5.9 years ago by ▴ 220
1
vote
1
reply
1.1k
views
correct order of cut off and normalization in RNAseq data
RNA-Seq
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 220
0
votes
2
replies
387
views
legal issues about running the analysis on the cloud
next-gen
updated 2.9 years ago by 102k • written 2.9 years ago by ▴ 220
0
votes
2
replies
785
views
tool for the new protocol of WES for CNV detection
next-gen
updated 2.9 years ago by ★ 2.9k • written 2.9 years ago by ▴ 220
3
votes
2
replies
542
views
uploading the files to the cloud
RNA-Seq
updated 2.9 years ago by 34k • written 2.9 years ago by ▴ 220
0
votes
5
replies
521
views
location of integrated vector in the genome in CRISPR experiment
genome
updated 3.0 years ago by 14k • written 3.0 years ago by ▴ 220
0
votes
0
replies
521
views
Comment: C: location of integrated vector in the genome in CRISPR experiment
3.0 years ago by Sara ▴ 220
0
votes
0
replies
521
views
Comment: C: location of integrated vector in the genome in CRISPR experiment
3.0 years ago by Sara ▴ 220
0
votes
1
reply
386
views
INDELs frequency at the on-target site in CRISPR experiment
genome
3.0 years ago by Sara ▴ 220
3
votes
3
replies
1.7k
views
create consensus sequence from bam file
alignment
3.0 years ago by Sara ▴ 220
0
votes
1
reply
1.7k
views
Comment: A: create consensus sequence from bam file
3.0 years ago by Sara ▴ 220
1
vote
1
reply
502
views
tool for the structural variants in the off target sites
next-gen
3.0 years ago by Sara ▴ 220
0
votes
2
replies
851
views
database for mouse tumor supressor genes and oncogenes
gene
3.0 years ago by Sara ▴ 220
0
votes
2
replies
693
views
cloud platform selection for genomics
next-gen
3.1 years ago by Sara ▴ 220
1
vote
1
reply
748
views
getting different number of reads in R1 and R2 after using UMItools
next-gen
updated 3.1 years ago by 16k • written 3.1 years ago by ▴ 220
0
votes
1
reply
433
views
Comment: C: Getting the coordinates of targeted locations by sgRNAs
3.1 years ago by Sara ▴ 220
0
votes
3
replies
433
views
Getting the coordinates of targeted locations by sgRNAs
next-gen
3.1 years ago by Sara ▴ 220
1
vote
1
reply
393
views
plot the number of variations within a certain window
SNP next-gen
3.1 years ago by Sara ▴ 220
5
votes
2
replies
945
views
predicting 3D structure of protein from DNA sequence
next-gen
3.2 years ago by Sara ▴ 220
4
votes
10
replies
879
views
merging VCF files or not
SNP vcf
updated 3.2 years ago by • 0 • written 3.4 years ago by ▴ 220
0
votes
1
reply
442
views
important alignment parameters
alignment
updated 3.2 years ago by ★ 3.7k • written 3.2 years ago by ▴ 220
13
votes
9
replies
3.7k
views
tool to analysis bulk RNAseq data with UMIs
next-gen
updated 3.3 years ago by 16k • written 3.3 years ago by ▴ 220
0
votes
3
replies
3.7k
views
Comment: C: tool to analysis bulk RNAseq data with UMIs
3.3 years ago by Sara ▴ 220
0
votes
1
reply
879
views
Comment: A: merging VCF files or not
3.4 years ago by Sara ▴ 220
0
votes
1
reply
879
views
Comment: C: merging VCF files or not
3.4 years ago by Sara ▴ 220
3
votes
4
replies
913
views
Extracting data from edgeR R package
R edgeR
updated 3.4 years ago by 11k • written 3.4 years ago by ▴ 220
0
votes
1
reply
913
views
Comment: C: extracting data from edgeR R package
3.4 years ago by Sara ▴ 220
8
votes
3
replies
588
views
How safe the UCSC is for patients data
RNA-Seq
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 220
3
votes
3
replies
1.8k
views
getting error when indexing bam files
genome alignment
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 220
0
votes
0
replies
620
views
Comparing 2 methods to identify CNVs using WGS data
genome
3.7 years ago by Sara ▴ 220
0
votes
6
replies
1.2k
views
visualizing the Shallow whole genome sequencing on the UCSC
genome
updated 3.7 years ago by ★ 3.4k • written 3.7 years ago by ▴ 220
0
votes
1
reply
1.2k
views
Comment: C: visualizing the Shallow whole genome sequencing on the UCSC
3.7 years ago by Sara ▴ 220
0
votes
2
replies
2.0k
views
frequency of each nucleotide at each position in sequence
RNA-Seq
written 5.4 years ago by ▴ 220
1
vote
1
reply
629
views
read counts per chromosome arm
genome alignment
updated 3.7 years ago by 152k • written 3.7 years ago by ▴ 220
4
votes
3
replies
2.2k
views
DE analysis using single cell RNA-seq data
rna-seq
updated 3.9 years ago by ▴ 450 • written 5.8 years ago by ▴ 220
1
vote
4
replies
1.3k
views
how to get read density for the first 1000 nt of each transcript
sequence next-gen RNA-Seq
updated 4.6 years ago by 102k • written 6.5 years ago by ▴ 220
122 results • Page 2 of 3
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