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0
votes
2
replies
753
views
Low coverage whole genome sequencing reveal excess heterozygosity for multiple SNPs. How to filter?
lcWGS
WGS
heterozygosity
11 months ago by
beausoleilmo
▴ 600
0
votes
0
replies
753
views
Comment:
Comment: Low coverage whole genome sequencing reveal excess heterozygosity for multiple S
11 months ago by
beausoleilmo
▴ 600
0
votes
0
replies
367
views
How to extract only neutral markers from low-coverage whole genome sequencing?
low-coverage
whole-genome-sequencing
updated 17 months ago by
Ram
44k • written 17 months ago by
beausoleilmo
▴ 600
2
votes
0
replies
7.8k
views
Answer:
Answer: VCF header line counting
17 months ago by
beausoleilmo
▴ 600
0
votes
1
reply
6.5k
views
Comment:
Comment: Help making ADMIXTURE output digestible
21 months ago by
beausoleilmo
▴ 600
0
votes
0
replies
6.9k
views
Comment:
Comment: Why Is Blast Creating Duplicates In My Output Files?!
23 months ago by
beausoleilmo
▴ 600
2
votes
0
replies
784
views
How to convert a Beagle file 3.3 to VCF with beagle2vcf.jar?
conversion
vcf
beagle
23 months ago by
beausoleilmo
▴ 600
0
votes
0
replies
683
views
Comment:
Comment: Left or right join between 2 BAM files (remove reads the should be filtered out
23 months ago by
beausoleilmo
▴ 600
0
votes
2
replies
683
views
Left or right join between 2 BAM files (remove reads the should be filtered out for sex chromosomes)
sex
chromosomes
BAM
filtering
23 months ago by
beausoleilmo
▴ 600
2
votes
2
replies
974
views
How to rename chromosome_position column in a Beagle file and match it with the index fai?
chromosome
index
fai
regex
beagle
updated 2.1 years ago by
Jukka Matilainen
▴ 80 • written 2.1 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
2.4k
views
Comment:
Comment: Is there a way to calculate breadth of coverage from a VCF?
2.1 years ago by
beausoleilmo
▴ 600
2
votes
5
replies
2.4k
views
Is there a way to calculate breadth of coverage from a VCF?
VCF
Coverage
Beagle
2.1 years ago by
beausoleilmo
▴ 600
1
vote
0
replies
2.4k
views
Answer:
Answer: Is there a way to calculate breadth of coverage from a VCF?
2.1 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
59k
views
Comment:
Comment: How to extract specific chromosome from vcf file
2.1 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
15k
views
Comment:
Comment: Convert fastq.gz to fastq.bgz
2.1 years ago by
beausoleilmo
▴ 600
0
votes
1
reply
15k
views
Comment:
Comment: Convert fastq.gz to fastq.bgz
2.1 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
2.4k
views
Comment:
Comment: Is there a way to calculate breadth of coverage from a VCF?
2.1 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
4.6k
views
Comment:
Comment: Calculate Fst to draw Manhattan plot
2.6 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
5.1k
views
Comment:
Comment: Error while creating .geno file with LEA
3.5 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
1.9k
views
Comment:
C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.3 years ago by
beausoleilmo
▴ 600
2
votes
2
replies
2.3k
views
Error running sam-dump
sam
NCBI
BAM
samtools
updated 4.3 years ago by
Biostar
20 • written 8.0 years ago by
beausoleilmo
▴ 600
2
votes
8
replies
1.9k
views
Detect sex chromosomes from WGS on a bird species (with reference genome)
WGS
chromosomes
updated 3.3 years ago by
clinnaeus
▴ 30 • written 4.7 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
5.1k
views
Comment:
C: Error while creating .geno file with LEA
4.3 years ago by
beausoleilmo
▴ 600
6
votes
5
replies
5.1k
views
Error while creating .geno file with LEA
LEA
geno
VCF
3.5 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
5.1k
views
Comment:
C: Error while creating .geno file with LEA
4.4 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
1.9k
views
Comment:
C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.6 years ago by
beausoleilmo
▴ 600
0
votes
2
replies
1.9k
views
Comment:
C: Detect sex chromosomes from WGS on a bird species (with reference genome)
4.7 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
11k
views
Answer:
A: dxy (Nei 1987) calculation
4.7 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
2.9k
views
Comment:
C: ShapeIt giving Segfault 11?
4.7 years ago by
beausoleilmo
▴ 600
1
vote
0
replies
1.7k
views
Building a reference database for metabarcoding and obitools
embl
metabarcoding
reference database
plants
diet
4.7 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
4.3k
views
Answer:
A: Admixture - Abort trap: 6
4.7 years ago by
beausoleilmo
▴ 600
9
votes
2
replies
35k
views
Answer:
Answer: Sort VCF File by Position?
4.7 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
8.7k
views
Comment:
C: Fast LD computation from VCF files using tomahawk
4.8 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
26k
views
Comment:
C: LD-decay in a r2 vs distance(cm) plot
4.8 years ago by
beausoleilmo
▴ 600
3
votes
0
replies
7.9k
views
Answer:
A: How to parallelize bcftools mpileup with GNU parallel?
4.8 years ago by
beausoleilmo
▴ 600
8
votes
6
replies
7.9k
views
6 follow
How to parallelize bcftools mpileup with GNU parallel?
bcftools
mpileup
parallel
updated 3.0 years ago by
Sarah
▴ 60 • written 4.8 years ago by
beausoleilmo
▴ 600
16
votes
3
replies
13k
views
What is the difference between mpileup samtools and bcftools?
bcftools
samtools
mpileup
variant calling
SNP
updated 4.8 years ago by
jkbonfield
★ 1.3k • written 4.8 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
13k
views
Comment:
C: What is the difference between mpileup samtools and bcftools?
4.8 years ago by
beausoleilmo
▴ 600
7
votes
6
replies
5.3k
views
Running BWA mem in a for loop
BWA
alignment
WGS
updated 4.8 years ago by
Gio12
▴ 220 • written 4.8 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
5.3k
views
Comment:
C: Running BWA mem in a for loop
4.8 years ago by
beausoleilmo
▴ 600
0
votes
1
reply
5.3k
views
Comment:
C: Running BWA mem in a for loop
4.8 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
51k
views
Comment:
C: How do you cite a tool that doesn't have a publication?
4.8 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
1.3k
views
Comment:
C: ecoPCR won't install on Mac (Mojave 10.14.5)
5.1 years ago by
beausoleilmo
▴ 600
2
votes
2
replies
1.3k
views
ecoPCR won't install on Mac (Mojave 10.14.5)
ecoPCR
metabarcoding
5.1 years ago by
beausoleilmo
▴ 600
1
vote
1
reply
1.2k
views
Chromosome naming convention: Why are there chromosomes named "1" and "1A"?
Chromosome
Zebra Finch
5.2 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
2.1k
views
Comment:
C: Is it a problem that the reference genome is not at the chromosome level?
5.3 years ago by
beausoleilmo
▴ 600
0
votes
1
reply
2.1k
views
Comment:
C: Is it a problem that the reference genome is not at the chromosome level?
5.3 years ago by
beausoleilmo
▴ 600
0
votes
1
reply
2.1k
views
Comment:
C: Is it a problem that the reference genome is not at the chromosome level?
5.3 years ago by
beausoleilmo
▴ 600
6
votes
6
replies
2.1k
views
Is it a problem that the reference genome is not at the chromosome level?
Chromosome
reference genome
scaffolds
updated 5.3 years ago by
Brice Sarver
★ 3.8k • written 5.3 years ago by
beausoleilmo
▴ 600
0
votes
0
replies
2.1k
views
Comment:
C: How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (rem
5.8 years ago by
beausoleilmo
▴ 600
142 results • Page
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