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1.9k
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How to process degenerate base region (DBRs) in a ddRAD sequencing protocol (remove PCR duplicates)?
ddRAD next-gen Stacks DBR
updated 11 months ago by 43k • written 6.6 years ago by ▴ 580
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20k
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Comment: C: Difference Between Genotyping And Resequencing
5.8 years ago by beausoleilmo ▴ 580
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1
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1.3k
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Comment: C: What is the definition of "multiply aligned" sequences compared to multiple alig
5.8 years ago by beausoleilmo ▴ 580
0
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3
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1.3k
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What is the definition of "multiply aligned" sequences compared to multiple aligned sequence
sequence DNA alignment
5.8 years ago by beausoleilmo ▴ 580
0
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1
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1.6k
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Comment: C: Is whole genome pool-sequencing a reduced representation sequencing technique?
6.0 years ago by beausoleilmo ▴ 580
0
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1
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1.6k
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Comment: C: Is whole genome pool-sequencing a reduced representation sequencing technique?
6.0 years ago by beausoleilmo ▴ 580
5
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5
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1.6k
views
Is whole genome pool-sequencing a reduced representation sequencing technique?
whole genome DNA sequencing
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 580
0
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2
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4.5k
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Comment: C: Difference between Allele frequency spectrum and Joint allele frequency spectrum
6.0 years ago by beausoleilmo ▴ 580
10
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4
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4.5k
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Difference between Allele frequency spectrum and Joint allele frequency spectrum
allele population structure
updated 10 months ago by ▴ 290 • written 6.0 years ago by ▴ 580
0
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0
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1.1k
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Is there a way to construct a pedigree using RADseq data?
RAD sequencing pedigree
6.1 years ago by beausoleilmo ▴ 580
0
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1
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14k
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Comment: C: What is population branch statistic (PBS)?
6.2 years ago by beausoleilmo ▴ 580
3
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3
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14k
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What is population branch statistic (PBS)?
population structure FST Natural Selection
updated 6.2 years ago by ▴ 670 • written 6.2 years ago by ▴ 580
4
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1
reply
7.6k
views
How is it possible to create a .fam file with PLINK with phenotypic data (for GEMMA)?
plink fam vcftools Gemma
updated 6.4 years ago by 87k • written 7.3 years ago by ▴ 580
7
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2
replies
1.8k
views
Why is there a star in some primer sequences (library preparation)
sequencing library DNA
updated 6.7 years ago by 47k • written 6.7 years ago by ▴ 580
0
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1
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4.6k
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Comment: C: What is the difference between a small-insert library, large-insert library and
6.8 years ago by beausoleilmo ▴ 580
3
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3
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4.6k
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What is the difference between a small-insert library, large-insert library and the reads themselves?
sequencing
updated 6.8 years ago by 20k • written 6.8 years ago by ▴ 580
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0
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1.2k
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Comment: C: What are modules and reactions in NGS?
6.8 years ago by beausoleilmo ▴ 580
0
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2
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1.2k
views
What are modules and reactions in NGS?
NGS sequencing
6.8 years ago by beausoleilmo ▴ 580
3
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3
replies
2.3k
views
Is RADseq the same thing as Shotgun sequencing?
RADseq Shotgun sequencing
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 580
0
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0
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2.3k
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Comment: C: Is RADseq the same thing as Shotgun sequencing?
6.9 years ago by beausoleilmo ▴ 580
13
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17
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7.5k
views
Why is FastQC not working after using Trim galore?
fastq FASTQC Fastqc
updated 7.0 years ago by 35k • written 7.7 years ago by ▴ 580
1
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0
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4.4k
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Answer: A: VCFtools --minDP flags not working
7.1 years ago by beausoleilmo ▴ 580
4
votes
4
replies
4.4k
views
VCFtools --minDP flags not working
vcftools Read Depth
7.1 years ago by beausoleilmo ▴ 580
1
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0
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6.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.2 years ago by beausoleilmo ▴ 580
0
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1
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6.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.2 years ago by beausoleilmo ▴ 580
0
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1
reply
6.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.2 years ago by beausoleilmo ▴ 580
0
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1
reply
6.0k
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Comment: C: Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
7.2 years ago by beausoleilmo ▴ 580
6
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11
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6.0k
views
Converting PLINK to EIGENSTRAT error using convertf (no valid snps)
EIGENSTRAT PLINK SNP PCA
updated 7.2 years ago by 4.2k • written 7.2 years ago by ▴ 580
3
votes
1
reply
3.0k
views
Is there a way to tell PLINK and VCFtools to sort the samples in a particular order?
PLINK VCFtools sort ped bed
updated 7.2 years ago by 10k • written 7.2 years ago by ▴ 580
1
vote
0
replies
3.3k
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What does the -A "Matching score" and -B "Mismatch penalty" flags doing in BWA mem?
BWA Matching score penalty GWAS
7.2 years ago by beausoleilmo ▴ 580
0
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0
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1.1k
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filtering tips for GWAS studies (admixture mapping)
vcftools filtering GWAS VCF
7.2 years ago by beausoleilmo ▴ 580
3
votes
1
reply
8.9k
views
How to order Admixture (ancestry) plot in R
ADMIXTURE R q plot
updated 7.3 years ago by ★ 3.0k • written 7.3 years ago by ▴ 580
12
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9
replies
2.8k
views
Why is it absolutely necessary to filter a VCF?
VCF bcftools vcftools samtools filtering
updated 7.3 years ago by ★ 1.4k • written 7.3 years ago by ▴ 580
0
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1
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2.8k
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Comment: C: Why is it absolutely necessary to filter a VCF?
7.3 years ago by beausoleilmo ▴ 580
0
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1
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2.8k
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Comment: C: Why is it absolutely necessary to filter a VCF?
7.3 years ago by beausoleilmo ▴ 580
1
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0
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5.3k
views
Answer: A: Can't figure out order of output rows in ADMIXTURE
7.3 years ago by beausoleilmo ▴ 580
0
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1
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5.9k
views
Answer: Answer: Help making ADMIXTURE output digestible
14 months ago by beausoleilmo ▴ 580
0
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0
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5.3k
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Comment: C: Can't figure out order of output rows in ADMIXTURE
7.3 years ago by beausoleilmo ▴ 580
0
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0
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5.9k
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Comment: C: Help making ADMIXTURE output digestible
7.3 years ago by beausoleilmo ▴ 580
0
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0
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2.4k
views
ADMIXTURE, size of .bed file not matching number of individuals in analysis
ADMIXTURE
7.3 years ago by beausoleilmo ▴ 580
6
votes
1
reply
3.7k
views
What does Number=0/Number=1 mean in a VCF?
VCF DNA GWAS
updated 7.3 years ago by 20k • written 7.3 years ago by ▴ 580
0
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0
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2.6k
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Comment: C: How common are Deletions and Indels?
7.3 years ago by beausoleilmo ▴ 580
0
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1
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2.6k
views
Comment: C: How common are Deletions and Indels?
7.3 years ago by beausoleilmo ▴ 580
3
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4
replies
2.6k
views
How common are Deletions and Indels?
VCFtools RTG RADseq
updated 7.3 years ago by 20k • written 7.3 years ago by ▴ 580
0
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0
replies
2.4k
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VCFtools filter missing genotypes conditional on a factor (population, species, etc.)
VCFtools Filter NGS RAD
7.3 years ago by beausoleilmo ▴ 580
0
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0
replies
1.7k
views
Comment: C: Can Scaffolds overlap?
7.3 years ago by beausoleilmo ▴ 580
1
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2
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1.7k
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Can Scaffolds overlap?
Scaffolds contigs RADseq
7.3 years ago by beausoleilmo ▴ 580
0
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1
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1.7k
views
Answer: A: Why genome seq A% ~= T% and G% ~= C%
7.3 years ago by beausoleilmo ▴ 580
0
votes
1
reply
141k
views
Comment: C: The Biostar Handbook. A bioinformatics e-book for beginners.
7.3 years ago by beausoleilmo ▴ 580
0
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0
replies
1.7k
views
Is GEMMA able to run a bayesian sparse linear mixed model with the sex column?
plink GWAS GEMMA fam
updated 13 months ago by 43k • written 7.3 years ago by ▴ 580
142 results • Page 2 of 3
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