User: feixue1039

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feixue103910
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Answer: A: Why does TopHat return wrong XS-Strand attribute in BAM ?
... XS:A:+/- indicates the strand of the transcript on the reference genome. When RNA-seq reads mapped to reference genome by Tophat, Tophat will try to infer the strandness of the transcripts where the reads originate from by the splice junction sites (splice donor/ acceptor could indicate 5' --> 3' ...
written 2.6 years ago by feixue103910

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