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Answer: Answer: HaplotypeCaller - only SNPs
23 hours ago by Pierre Lindenbaum 161k
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199
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Answer: Answer: Difference between samtools "-f 9" and "-f 11"
1 day ago by Pierre Lindenbaum 161k
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279
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Answer: Answer: How to slice a gvcf file with tabix?
2 days ago by Pierre Lindenbaum 161k
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195
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Answer: Answer: Getting the nucleotide sequence of proteins, having their UniProt IDs
2 days ago by Pierre Lindenbaum 161k
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444
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Answer: Answer: Filtering sam or bam file with maximum matching region
4 days ago by Pierre Lindenbaum 161k
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640
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Answer: Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi
5 days ago by Pierre Lindenbaum 161k
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528
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Answer: Answer: Indexing the Reference Genome is not done in STAR
6 days ago by Pierre Lindenbaum 161k
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720
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Answer: Answer: Questions about a bug when transferring cram file to bam file
7 days ago by Pierre Lindenbaum 161k
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406
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Answer: Answer: Sheep reference genome remapping coordinates
7 days ago by Pierre Lindenbaum 161k
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281
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Answer: Answer: Bwa sampe - BGI
8 days ago by Pierre Lindenbaum 161k
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364
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Answer: Answer: Best way to deal with overlapping read names in merged BAM files
9 days ago by Pierre Lindenbaum 161k
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228
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Answer: Answer: CombineGVCFs vs. MergeVcfs
9 days ago by Pierre Lindenbaum 161k
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216
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Answer: Answer: Problem with Sniffles pipeline and SV calling help
9 days ago by Pierre Lindenbaum 161k
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2
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363
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Answer: Answer: How to download large-scale cDNA sequences from NCBI effectively ?
11 days ago by Pierre Lindenbaum 161k
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540
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Answer: Answer: Can you suggest a protein PDB that has two chainst but only 50 total number of a
12 days ago by Pierre Lindenbaum 161k
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290
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Answer: Answer: Merging vcf files with bcftools ([E::get_intv] Failed to parse TBX_VCF, was wron
13 days ago by Pierre Lindenbaum 161k
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200
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Answer: Answer: Finding variants within a subset of a BAM file
14 days ago by Pierre Lindenbaum 161k
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243
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Answer: Answer: Downsampling long-read BAM files
14 days ago by Pierre Lindenbaum 161k
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415
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Answer: Answer: Database or Tool: Identifying Gene Regions (Exon/Intron/UTR) from Chromosome Pos
15 days ago by Pierre Lindenbaum 161k
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129
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Answer: Answer: BCFTools install vcfmerge.o error
15 days ago by Pierre Lindenbaum 161k
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206
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Answer: Answer: small RNA creating .bam from .sam file
16 days ago by Pierre Lindenbaum 161k
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231
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Answer: Answer: latest dbSNP (ncbi) which genome assembly
16 days ago by Pierre Lindenbaum 161k
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1
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354
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Answer: Answer: How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
18 days ago by Pierre Lindenbaum 161k
2
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2
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513
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Answer: Answer: Artificial deletion in bam
20 days ago by Pierre Lindenbaum 161k
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337
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Answer: Answer: Tool to Identify Gene, Regulatory Role, and Function at Integration Sites
20 days ago by Pierre Lindenbaum 161k
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250
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Answer: Answer: filtering VCF sites and impose whatever excluded ad missing
20 days ago by Pierre Lindenbaum 161k
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539
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Answer: Answer: frequency of each variant per sample
20 days ago by Pierre Lindenbaum 161k
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315
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Answer: Answer: Problems with Nextflow to run NanoRtax Pipeline
updated 20 days ago by 6.4k • written 21 days ago by 161k
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261
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Answer: Answer: Multiple iterations of sorted bam output files with picard SortSam
21 days ago by Pierre Lindenbaum 161k
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220
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Answer: Answer: Using nextflow for performing quality control and trimming of reads
22 days ago by Pierre Lindenbaum 161k
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296
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
23 days ago by Pierre Lindenbaum 161k
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277
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Answer: Answer: BioGRID REST - How to retrieve all the protein interactions?
26 days ago by Pierre Lindenbaum 161k
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1.0k
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Answer: Answer: F*up Night style events for Bioinformatics ? Comment if you're interested!
27 days ago by Pierre Lindenbaum 161k
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350
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Answer: Answer: diffbind : killed dba.count(DBsample, bParallel=FALSE)
27 days ago by Pierre Lindenbaum 161k
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339
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Answer: Answer: calculate mismatch rate from VCF file
27 days ago by Pierre Lindenbaum 161k
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298
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Answer: Answer: Confirm if a genome position falls into a coding exon
4 weeks ago by Pierre Lindenbaum 161k
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394
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Answer: Answer: 0-based coordinates from samtools depth
4 weeks ago by Pierre Lindenbaum 161k
3
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2
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593
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Answer: Answer: Variant calling of GBS data
4 weeks ago by Pierre Lindenbaum 161k
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688
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Answer: Answer: How to filter Illumina Nirvana variant annotation?
4 weeks ago by Pierre Lindenbaum 161k
1
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378
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Answer: Answer: What is meant by 'genomic order' in gatk's GatherVcfs, and how do I check for it
4 weeks ago by Pierre Lindenbaum 161k
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524
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Answer: Answer: I have a bed file containing genomic locations and A or B compartment annotation
4 weeks ago by Pierre Lindenbaum 161k
2
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1
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281
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Answer: Answer: Annotating indels and SNVs
4 weeks ago by Pierre Lindenbaum 161k
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376
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Answer: Answer: HISAT2 installation issue
4 weeks ago by Pierre Lindenbaum 161k
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419
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Answer: Answer: bcftools select sites with multiple combinatio ns of FILTER column
4 weeks ago by Pierre Lindenbaum 161k
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587
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Answer: Answer: Fine-tuning NCBI taxid / taxidlist
5 weeks ago by Pierre Lindenbaum 161k
2
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1
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296
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Answer: Answer: Annotate genes from gtf file to vcf file
5 weeks ago by Pierre Lindenbaum 161k
2
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1
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507
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Answer: Answer: bedToBigBed error, what am I doing wrong?
5 weeks ago by Pierre Lindenbaum 161k
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411
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Answer: Answer: Biostrings extract read
5 weeks ago by Pierre Lindenbaum 161k
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437
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Answer: Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
5 weeks ago by Pierre Lindenbaum 161k
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317
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Answer: Answer: error in wigToBigWig while converting mappability to bedgraph
5 weeks ago by Pierre Lindenbaum 161k
4,685 results • Page 1 of 94
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