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0
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1
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380
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Comment:
Comment: Issues filtering VCF file with bcftools/vcftools
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
409
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
409
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
409
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
409
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
510
views
Answer:
Answer: Fine-tuning NCBI taxid / taxidlist
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
171
views
Comment:
Comment: Interprete plot of dispersion estimation by DESeq2
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
239
views
Comment:
Comment: Annotate genes from gtf file to vcf file
8 days ago by
Pierre Lindenbaum
160k
2
votes
1
reply
239
views
Answer:
Answer: Annotate genes from gtf file to vcf file
8 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
335
views
Comment:
Comment: How to find gene ids for Pfam ids?
8 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
385
views
Comment:
Comment: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
8 days ago by
Pierre Lindenbaum
160k
1
vote
1
reply
409
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
2
votes
1
reply
409
views
Answer:
Answer: bedToBigBed error, what am I doing wrong?
8 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
350
views
Answer:
Answer: Biostrings extract read
9 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
385
views
Comment:
Comment: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
9 days ago by
Pierre Lindenbaum
160k
1
vote
1
reply
385
views
Answer:
Answer: How to add FORMAT/TAG = "." to all samples in a vcf file via bcftools?
9 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
158
views
Comment:
Comment: Issues With Cram -> Fastq from GTEx v8 WGS
9 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
271
views
Answer:
Answer: error in wigToBigWig while converting mappability to bedgraph
9 days ago by
Pierre Lindenbaum
160k
3
votes
0
replies
200
views
Answer:
Answer: Problem with .bed file
10 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
200
views
Comment:
Comment: Problem with .bed file
10 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
271
views
Comment:
Comment: error in wigToBigWig while converting mappability to bedgraph
10 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
172
views
Comment:
Comment: BRIG coverage.graph issues
11 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
225
views
Comment:
Comment: Issue with bigWigSummary utility of Kent/UCSC utilities
13 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
323
views
Comment:
Comment: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
13 days ago by
Pierre Lindenbaum
160k
1
vote
1
reply
323
views
Answer:
Answer: Can't use VarScan2 to call somatic variants from my tumor/sample vcf pair
13 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
395
views
Comment:
Comment: VCF file not being indexed, decided to sort could not sort
14 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
204
views
Answer:
Answer: converting VCF files to TSV file
14 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
126
views
Comment:
Comment: Bed file
14 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
227
views
Answer:
Answer: Bed file filtering
16 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
354
views
Comment:
Comment: java version compatible with GATK 3.2.2
16 days ago by
Pierre Lindenbaum
160k
1
vote
1
reply
354
views
Comment:
Comment: java version compatible with GATK 3.2.2
16 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
408
views
Comment:
Comment: I can't add VAF from population for all of my variants from VCF file
16 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
258
views
Comment:
Comment: repeatseq compilation issues
16 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
800
views
Comment:
Comment: Python3 or Ubuntu, not perl: Have Primers with Degenerate Bases, Need tool or wa
17 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
800
views
Comment:
Comment: Have Primers with Degenerate Bases, Need Tool or way in Python3 to List all Poss
17 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
152
views
Comment:
Comment: Understanding Uncommon Genotype Formats in VCF Files Generated by nf-core RNAvar
17 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
183
views
Answer:
Answer: Query Name too long - samtools
17 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
197
views
Comment:
Comment: I am trying to generate a bcf file using samtools mpileup, is this suppose to ha
17 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
197
views
Comment:
Comment: I am trying to generate a bcf file using samtools mpileup, is this suppose to ha
17 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
227
views
Answer:
Answer: Merging 2 VCF files using bcftools, however how should I update the fields accor
18 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
469
views
Comment:
Comment: i'm trying to use STAR and there is a problem...
19 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
229
views
Comment:
Comment: Problem merging plink files for somatic variants.
19 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
469
views
Answer:
Answer: i'm trying to use STAR and there is a problem...
19 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
606
views
Answer:
Answer: Warning: Expected at least 2 parts in FORMAT entry: ID=GP,Number=3,Type=Float,De
19 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
458
views
Comment:
Comment: index fasta file for HaplotypeCaller
20 days ago by
Pierre Lindenbaum
160k
0
votes
0
replies
363
views
Comment:
Comment: Issues with bcftools
21 days ago by
Pierre Lindenbaum
160k
0
votes
1
reply
360
views
Comment:
Comment: How to merge VCF files from multiple samples and remove individual level informa
21 days ago by
Pierre Lindenbaum
160k
3
votes
1
reply
360
views
Answer:
Answer: How to merge VCF files from multiple samples and remove individual level informa
21 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
518
views
Comment:
Comment: Getting fasta file from the VCF after variant calling
21 days ago by
Pierre Lindenbaum
160k
1
vote
0
replies
458
views
Comment:
Comment: index fasta file for HaplotypeCaller
21 days ago by
Pierre Lindenbaum
160k
12,306 results • Page
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