Admin: Pierre Lindenbaum

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France/Nantes/Institut du Thorax - INSERM UMR1087
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Posts by Pierre Lindenbaum

<prev • 6,967 results • page 2 of 697 • next >
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Comment: C: Replacing the Chr names and position notions in vcf
... see https://www.biostars.org/p/98582/ ...
written 2 days ago by Pierre Lindenbaum104k
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Comment: C: Convert bam alignments to MSA file format...
... what's your final goal ? what would you want to do with a MSA ? ...
written 3 days ago by Pierre Lindenbaum104k
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Answer: C: Any ideas on converting IUPAC ambiguity codes in a fasta file
... see https://www.biostars.org/p/282490/ $ gcc biostars282490.c $ ./a.out AGCTAGYACG AGCTAGCACG AGCTAGTACG ...
written 4 days ago by Pierre Lindenbaum104k
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Comment: C: Base Recabiliration Filters out 88% of the reads
... what the major-minor version of gatk please . GATK3.* ? ...
written 4 days ago by Pierre Lindenbaum104k
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Comment: C: How can I use BALIBASE as a benchmark (on line)
... > Earlier I asked a question of how i compare between(clustal/t-coffee/muscle please validate the answer if it's working. (green tick on the left) ...
written 4 days ago by Pierre Lindenbaum104k
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Comment: C: Base Recabiliration Filters out 88% of the reads
... lookls like SplitNCigarReads produces malformed reads. what's your version of gatk ? ...
written 4 days ago by Pierre Lindenbaum104k
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Answer: A: Looping local blastn in bash
... for F in dir/*.fasta do blastn -in $F -db dbGOI.fasta -out ${F%.*}.txt done ...
written 4 days ago by Pierre Lindenbaum104k
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Comment: C: Exception in thread "main" java.io.FileNotFoundException
... so where is 1R1CUT.fastq ? what is this double '//' ? It's not a problem with Trimmomatic, it 's a problem with how and where you have generated those fastq files. ...
written 4 days ago by Pierre Lindenbaum104k
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Comment: C: pindel output error
... run `samtools view -H` and check the read groups `RG` in the bam header. Is there 192 distinct SN names ? ...
written 5 days ago by Pierre Lindenbaum104k
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Comment: C: Loadfeatures in Genomicfeatures not working, whats the alternative to load txdb
... > The title says the gist of my problem! no, it doesn't. ...
written 5 days ago by Pierre Lindenbaum104k

Latest awards to Pierre Lindenbaum

Teacher 2 days ago, created an answer with at least 3 up-votes. For A: get taxonomy lineage from organism's name
Teacher 2 days ago, created an answer with at least 3 up-votes. For A: get taxonomy lineage from organism's name
Scholar 2 days ago, created an answer that has been accepted. For A: Identify homopolymer stretches in a given genome
Scholar 2 days ago, created an answer that has been accepted. For A: Identify homopolymer stretches in a given genome
Scholar 3 days ago, created an answer that has been accepted. For A: Identify homopolymer stretches in a given genome
Teacher 3 days ago, created an answer with at least 3 up-votes. For A: get taxonomy lineage from organism's name
Scholar 6 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Appreciated 6 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Teacher 9 days ago, created an answer with at least 3 up-votes. For A: Preferred Tools For Making Analysis Pipeline Flowchart ?
Scholar 9 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Appreciated 10 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Commentator 10 days ago, created a comment with at least 3 up-votes. For C: Advice For Newcomers To The Bioinformatics Field
Good Answer 10 days ago, created an answer that was upvoted at least 5 times. For A: Preferred Tools For Making Analysis Pipeline Flowchart ?
Appreciated 14 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 17 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Appreciated 19 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 20 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Appreciated 20 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Appreciated 20 days ago, created a post with more than 5 votes. For Biostars based Q&A for Bioconductor: http://support.bioconductor.org
Scholar 21 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Teacher 23 days ago, created an answer with at least 3 up-votes. For A: Where Can I Get Annovar 'Refgene' Format?
Scholar 23 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist
Great Question 23 days ago, created a question with more than 5,000 views. For Mapping Snps To Pathways
Great Question 25 days ago, created a question with more than 5,000 views. For Mapping Snps To Pathways
Scholar 27 days ago, created an answer that has been accepted. For A: Bedtools Invalid record, record does not exist

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