User: shengwei

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shengwei30
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Posts by shengwei

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Answer: A: Download SAM/BAM files from SRA takes ages!!!
... check [here][1] for an example using Aspera Connect (ascp): 1. To download prefetch --max-size 100G --transport ascp --ascp-path "/path/to/aspera/3.6.2/bin/ascp|/path/to/aspera/3.6.2/etc/asperaweb_id_dsa.openssh" --output-file $OUTPUT_DIR/$SRA_ID.sra $SRA_ID 2. To extract fastq-dump - ...
written 10 months ago by shengwei30
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Answer: A: Cazy Database Sequences Download
... I use [dbCAN][1], it's based on CAZy database and regularly updated. You can annotate your protein online, or download the database then do blastp/hmmscan search locally. [1]: http://cys.bios.niu.edu/dbCAN2/ ...
written 3.0 years ago by shengwei30

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Teacher 2.6 years ago, created an answer with at least 3 up-votes. For A: Cazy Database Sequences Download

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