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Answer: Answer: RNAseq data DEG analysis - DESeq2 normalized data
17 months ago by dsull ★ 4.6k
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847
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Answer: Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
18 months ago by dsull ★ 4.6k
3
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1
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4.0k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
18 months ago by dsull ★ 4.6k
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722
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Answer: Answer: SMARTseq2 scRNAseq and gene length normalization
18 months ago by dsull ★ 4.6k
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1.2k
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Answer: Answer: RNA velocity similar mtx for spliced and unspliced region (dropseq)
20 months ago by dsull ★ 4.6k
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555
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Answer: Answer: Prior to alignment of RNA-seq data
20 months ago by dsull ★ 4.6k
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1.4k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
20 months ago by dsull ★ 4.6k
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0
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489
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Answer: Answer: Quantifying expression levels of IsoSeq reads with Kallisto
20 months ago by dsull ★ 4.6k
3
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586
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Answer: Answer: Deseq2
20 months ago by dsull ★ 4.6k
2
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419
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Answer: Answer: Is there any way to make p-value high if correlation has negative value?
21 months ago by dsull ★ 4.6k
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885
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Answer: Answer: EM algorithm in Kallisto
2.0 years ago by dsull ★ 4.6k
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1.0k
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Answer: Answer: Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer
2.0 years ago by dsull ★ 4.6k
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5.1k
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Answer: Answer: Differences between SMART-seq2, SMART-seq3, and 10x
2.0 years ago by dsull ★ 4.6k
3
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1
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1.7k
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Answer: Answer: Analysis of shRNA/CRISPR screens in 2021
2.2 years ago by dsull ★ 4.6k
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2.8k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
2.2 years ago by dsull ★ 4.6k
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444
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Answer: Answer: Ways to mapping a transcriptome against a single gene
2.2 years ago by dsull ★ 4.6k
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2.0k
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Answer: Answer: the relationship of ATAC-seq and H3K27ac
2.2 years ago by dsull ★ 4.6k
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0
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992
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Answer: Answer: Interpretation of reads
2.3 years ago by dsull ★ 4.6k
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1.6k
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Answer: Answer: TCGA Sample barcode
2.3 years ago by dsull ★ 4.6k
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1.8k
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Answer: Answer: Kallisto bustools index
2.3 years ago by dsull ★ 4.6k
2
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0
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971
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Answer: Answer: Kallisto alignment method for single nuclei
2.3 years ago by dsull ★ 4.6k
2
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1
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836
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Answer: Answer: Where is the most up-to date TCGA clinic data?
2.3 years ago by dsull ★ 4.6k
2
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0
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1.8k
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Answer: Answer: Normalization of RNA-seq data with Kallisto/Sleuth for comparisons across treatm
2.4 years ago by dsull ★ 4.6k
2
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1
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1.0k
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Answer: Answer: anybody know what the 4 non-ACGUT characters are in Gencode 38 transcript file,
2.4 years ago by dsull ★ 4.6k
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676
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Answer: Answer: Using RPKM to compare gene expression between samples
2.4 years ago by dsull ★ 4.6k
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1.6k
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Answer: A: Why full-length sequencing is not possible in UMI-based methods in single-cell R
2.6 years ago by dsull ★ 4.6k
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2
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1.2k
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Answer: A: TCGA expression dataset handling
2.6 years ago by dsull ★ 4.6k
0
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2
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748
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Answer: A: How to analyze ChIP-seq with pipline?
2.6 years ago by dsull ★ 4.6k
3
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1.0k
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Answer: A: RNA-Seq Data analysis
2.7 years ago by dsull ★ 4.6k
2
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0
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547
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Answer: A: Gene size correction for small RNA
2.7 years ago by dsull ★ 4.6k
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1.1k
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Answer: A: Kallisto single cell velocity tutorial question
2.9 years ago by dsull ★ 4.6k
2
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0
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1.4k
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Answer: A: Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis
3.0 years ago by dsull ★ 4.6k
3
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1
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1.1k
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Answer: A: Building a cDNA and intron index for Kallisto/Bustools Single Cell Velocity for
3.0 years ago by dsull ★ 4.6k
4
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0
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4.0k
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Answer: C: [RNA-Seq] STAR vs Subread
3.0 years ago by dsull ★ 4.6k
0
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1
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1.4k
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Answer: A: MAGeCK vs MWU CRISPR Screen Tests
3.1 years ago by dsull ★ 4.6k
1
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0
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785
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Answer: A: How to deal with "///" separator in Geo2r when loading data to enrichr
3.1 years ago by dsull ★ 4.6k
1
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1
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734
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Answer: A: help clarify ways to measure coverage in RNA-Seq libraries
3.1 years ago by dsull ★ 4.6k
2
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1
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1.3k
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Answer: A: Salmon with Sleuth
3.1 years ago by dsull ★ 4.6k
1
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0
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675
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Answer: A: RNA-seq Data for Kidney Tissue
3.2 years ago by dsull ★ 4.6k
0
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1
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3.3k
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Answer: A: How to compute Spearman correlation between numeric and non-numeric data variabl
3.2 years ago by dsull ★ 4.6k
3
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0
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1.1k
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Answer: A: RNA seq data analysis
3.2 years ago by dsull ★ 4.6k
1
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1
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1.0k
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Answer: A: Did TCGA consortium recommend any best practice guideline for cross-sample RNAse
3.2 years ago by dsull ★ 4.6k
2
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0
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2.3k
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Answer: A: Blood Derived Normal RNA_seq samples TCGA
3.3 years ago by dsull ★ 4.6k
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0
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943
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Answer: A: Data extraction from GEO onto R
3.3 years ago by dsull ★ 4.6k
3
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2
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2.8k
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Answer: A: fGSEA with preranked data based off gene expression using DeSeq2
3.3 years ago by dsull ★ 4.6k
1
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0
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507
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Answer: A: RNA-Seq results comparison
3.3 years ago by dsull ★ 4.6k
3
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0
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1.3k
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Answer: A: Genes vs transcripts in RNA-seq analysis
3.3 years ago by dsull ★ 4.6k
0
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0
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839
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Answer: A: CUFFLINKS FROM TOPHAT2 STUFF...
3.3 years ago by dsull ★ 4.6k
3
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1
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2.7k
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Answer: A: DESeq2 rlogTransformed count data have negative values. Why are they negative?
3.3 years ago by dsull ★ 4.6k
0
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0
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820
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Answer: A: Directionality of GSEA result Vs log2FC
3.3 years ago by dsull ★ 4.6k
150 results • Page 2 of 3
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