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247
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Comment: Comment: To get p-values for the TPM
10 hours ago by dsull ★ 5.8k
1
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2
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247
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Answer: Answer: To get p-values for the TPM
12 hours ago by dsull ★ 5.8k
0
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1
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379
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Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
12 hours ago by dsull ★ 5.8k
2
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1
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379
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Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
2 days ago by dsull ★ 5.8k
0
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0
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303
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Answer: Answer: How to establish haplotype-specific gene expression levels
2 days ago by dsull ★ 5.8k
1
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0
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180
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Comment: Comment: from row count to tpm
2 days ago by dsull ★ 5.8k
1
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0
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173
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
8 days ago by dsull ★ 5.8k
1
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1
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504
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
14 days ago by dsull ★ 5.8k
1
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1
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504
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Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
14 days ago by dsull ★ 5.8k
0
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1
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303
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Comment: Comment: How to to establish haplotype-specific gene expression levels
14 days ago by dsull ★ 5.8k
0
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0
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261
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Comment: Comment: rRNA depletion of RIP-seq samples
15 days ago by dsull ★ 5.8k
1
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1
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200
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
16 days ago by dsull ★ 5.8k
1
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0
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257
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
20 days ago by dsull ★ 5.8k
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0
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458
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Comment: Comment: Installing Cell Ranger
23 days ago by dsull ★ 5.8k
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0
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353
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Comment: Comment: DESeq2 and normalization
26 days ago by dsull ★ 5.8k
0
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0
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518
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Comment: Comment: STAR aligner options
27 days ago by dsull ★ 5.8k
1
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0
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819
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
27 days ago by dsull ★ 5.8k
0
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1
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518
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Comment: Comment: STAR aligner options
28 days ago by dsull ★ 5.8k
1
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1
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353
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Answer: Answer: DESeq2 and normalization
28 days ago by dsull ★ 5.8k
0
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0
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.8k
0
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1
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.8k
1
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1
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699
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
4 weeks ago by dsull ★ 5.8k
1
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1
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699
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.8k
0
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0
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227
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Comment: Comment: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
0
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1
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227
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Answer: Answer: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
3
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1
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357
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Comment: Comment: Average expression of a sample in single-cell data
5 weeks ago by dsull ★ 5.8k
1
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0
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377
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Answer: Answer: scRNAseq normalization
5 weeks ago by dsull ★ 5.8k
0
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0
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153
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Answer: Answer: STAR --sjdbGTFfile in alignment step
5 weeks ago by dsull ★ 5.8k
1
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0
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302
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Comment: Comment: RNA-seq bam file normalization
7 weeks ago by dsull ★ 5.8k
1
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1
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281
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
7 weeks ago by dsull ★ 5.8k
2
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0
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349
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
7 weeks ago by dsull ★ 5.8k
4
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1
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349
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
7 weeks ago by dsull ★ 5.8k
1
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1
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600
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Comment: Comment: Huge decrease of BUS records using bustools
8 weeks ago by dsull ★ 5.8k
0
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1
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258
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
8 weeks ago by dsull ★ 5.8k
3
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0
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546
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
8 weeks ago by dsull ★ 5.8k
0
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0
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567
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 5.8k
0
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0
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567
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
8 weeks ago by dsull ★ 5.8k
2
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0
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478
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Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by dsull ★ 5.8k
0
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0
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249
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Answer: Answer: Using tophat2 output for kallisto
8 weeks ago by dsull ★ 5.8k
0
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2
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478
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Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by dsull ★ 5.8k
2
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1
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368
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Answer: Answer: bulk seq vs. sc-seq
10 weeks ago by dsull ★ 5.8k
0
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1
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547
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Comment: Comment: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.8k
0
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1
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547
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Answer: Answer: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.8k
1
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0
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371
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Answer: Answer: How to do DESeq2 on Kallisto Data
11 weeks ago by dsull ★ 5.8k
0
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1
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436
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
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0
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436
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
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1
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582
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Comment: Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
11 weeks ago by dsull ★ 5.8k
2
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1
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603
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Comment: Comment: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
3
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1
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603
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
0
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0
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1.0k
views
Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by dsull ★ 5.8k
599 results • Page 1 of 12
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