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Comment: Comment: from row count to tpm
1 day ago by dsull ★ 5.8k
1
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0
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170
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Comment: Comment: Help/Direction Needed for Data Analysis of RNA
7 days ago by dsull ★ 5.8k
1
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1
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500
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Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
13 days ago by dsull ★ 5.8k
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1
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301
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Comment: Comment: How to to establish haplotype-specific gene expression levels
13 days ago by dsull ★ 5.8k
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0
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261
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Comment: Comment: rRNA depletion of RIP-seq samples
14 days ago by dsull ★ 5.8k
1
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1
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200
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Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
15 days ago by dsull ★ 5.8k
1
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252
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Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
20 days ago by dsull ★ 5.8k
0
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0
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452
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Comment: Comment: Installing Cell Ranger
22 days ago by dsull ★ 5.8k
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0
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351
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Comment: Comment: DESeq2 and normalization
25 days ago by dsull ★ 5.8k
0
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0
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515
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Comment: Comment: STAR aligner options
26 days ago by dsull ★ 5.8k
1
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0
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813
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Comment: Comment: Only one read per run - Trying to use CellRangerv7
26 days ago by dsull ★ 5.8k
0
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1
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515
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Comment: Comment: STAR aligner options
27 days ago by dsull ★ 5.8k
0
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0
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
29 days ago by dsull ★ 5.8k
0
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1
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7.0k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.8k
1
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1
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698
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Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
4 weeks ago by dsull ★ 5.8k
0
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0
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226
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Comment: Comment: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
3
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1
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354
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Comment: Comment: Average expression of a sample in single-cell data
5 weeks ago by dsull ★ 5.8k
1
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0
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298
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Comment: Comment: RNA-seq bam file normalization
7 weeks ago by dsull ★ 5.8k
2
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0
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346
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Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
7 weeks ago by dsull ★ 5.8k
1
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1
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598
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Comment: Comment: Huge decrease of BUS records using bustools
8 weeks ago by dsull ★ 5.8k
0
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1
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257
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Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
8 weeks ago by dsull ★ 5.8k
0
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0
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562
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Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
8 weeks ago by dsull ★ 5.8k
2
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0
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476
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Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by dsull ★ 5.8k
0
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2
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476
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Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by dsull ★ 5.8k
0
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1
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544
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Comment: Comment: Differential expression analysis with very high duplication rate
10 weeks ago by dsull ★ 5.8k
0
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1
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433
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
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0
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433
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Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
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1
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581
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Comment: Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
11 weeks ago by dsull ★ 5.8k
2
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1
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598
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Comment: Comment: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
0
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0
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1.0k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
12 weeks ago by dsull ★ 5.8k
2
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1
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1.0k
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Comment: Comment: I would like to exclude rRNA in RSEM and quantify other genes.
3 months ago by dsull ★ 5.8k
0
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0
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141k
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Comment: Comment: The Biostar Handbook. A bioinformatics e-book for beginners.
3 months ago by dsull ★ 5.8k
0
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0
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710
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 5.8k
1
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1
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710
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 5.8k
0
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1
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710
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 5.8k
0
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1
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710
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Comment: Comment: Troubleshooting RNA-seq data with DNA contamination
3 months ago by dsull ★ 5.8k
2
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2
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994
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
3 months ago by dsull ★ 5.8k
1
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1
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994
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Comment: Comment: Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
3 months ago by dsull ★ 5.8k
0
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0
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by dsull ★ 5.8k
0
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0
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573
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Comment: Comment: Problem in Salmon when indexing Rattus_norvegicus
3 months ago by dsull ★ 5.8k
1
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0
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by dsull ★ 5.8k
0
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2
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by dsull ★ 5.8k
1
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2
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2.0k
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Comment: Comment: Determining computer time required
3 months ago by dsull ★ 5.8k
0
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0
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843
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
3 months ago by dsull ★ 5.8k
0
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0
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843
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Comment: Comment: Deciding if a study used Bulk or single-cell RNA sequencing using the GEO data
3 months ago by dsull ★ 5.8k
4
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0
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2.0k
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Comment: Comment: First experiences matter
3 months ago by dsull ★ 5.8k
1
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1
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682
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Comment: Comment: Log2 transformation is well used, but is there a good paper that can be used as
3 months ago by dsull ★ 5.8k
2
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1
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707
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Comment: Comment: Tests for the linear and non-linear relationship between two genes
3 months ago by dsull ★ 5.8k
0
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0
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829
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Comment: Comment: Inquiry Regarding Cutoff for Survival Analysis
4 months ago by dsull ★ 5.8k
0
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0
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548
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Comment: Comment: Kallisto-Bustools Output prpblems
4 months ago by dsull ★ 5.8k
409 results • Page 1 of 9
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