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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
3 months ago by dsull ★ 4.0k
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1
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379
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Comment: Comment: Tools for strand direction detection RNA-Seq
4 months ago by dsull ★ 4.0k
2
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0
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379
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Comment: Comment: Tools for strand direction detection RNA-Seq
4 months ago by dsull ★ 4.0k
0
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1
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.0k
0
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0
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.0k
0
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0
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1.4k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.0k
1
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1
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1.4k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.0k
1
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1
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317
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
4 months ago by dsull ★ 4.0k
0
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0
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1.0k
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Comment: Comment: How to choose parameters for kallisto single end mode?
5 months ago by dsull ★ 4.0k
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0
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1.0k
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Comment: Comment: How to choose parameters for kallisto single end mode?
5 months ago by dsull ★ 4.0k
1
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1
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1.0k
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Comment: Comment: How to choose parameters for kallisto single end mode?
5 months ago by dsull ★ 4.0k
1
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0
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555
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Comment: Comment: Kallisto on identical transcript
5 months ago by dsull ★ 4.0k
1
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1
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555
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Answer: Answer: Kallisto on identical transcript
5 months ago by dsull ★ 4.0k
1
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1
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311
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Comment: Comment: Can you use kallisto to process GRO-seq data?
6 months ago by dsull ★ 4.0k
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0
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1.4k
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Comment: Comment: Kallisto bustools index
6 months ago by dsull ★ 4.0k
0
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0
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1.4k
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Comment: Comment: Kallisto bustools index
6 months ago by dsull ★ 4.0k
0
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1
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299
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Comment: Comment: Normalize and perform differential expression analysis for two sets of transcrip
6 months ago by dsull ★ 4.0k
2
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1
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743
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
6 months ago by dsull ★ 4.0k
2
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0
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472
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
7 months ago by dsull ★ 4.0k
1
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0
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424
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Comment: Comment: Statistical exams in case of low replicate number in RNAseq analysis
7 months ago by dsull ★ 4.0k
2
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0
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996
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
7 months ago by dsull ★ 4.0k
1
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1
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996
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
7 months ago by dsull ★ 4.0k
1
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1
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996
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Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
7 months ago by dsull ★ 4.0k
0
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0
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870
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Comment: Comment: Understanding TCGA Pancancer data from cBioPortal
7 months ago by dsull ★ 4.0k
0
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0
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664
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Comment: Comment: HT-seq CPTAC,RNA-seq
7 months ago by dsull ★ 4.0k
0
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1
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664
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Comment: Comment: HT-seq CPTAC,RNA-seq
7 months ago by dsull ★ 4.0k
0
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1
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664
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Comment: Comment: HT-seq CPTAC,RNA-seq
7 months ago by dsull ★ 4.0k
2
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0
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427
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Comment: Comment: Why do I get a positive gene expression with qPCR for one my genes but in with w
7 months ago by dsull ★ 4.0k
3
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0
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329
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Answer: Answer: What are the advantages of GO and KEGG? What should be as next step?
7 months ago by dsull ★ 4.0k
1
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1
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901
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
8 months ago by dsull ★ 4.0k
1
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1
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901
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
8 months ago by dsull ★ 4.0k
2
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0
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768
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Comment: Comment: 96% of reads aligned to the genome, but only 40% to the transcriptome?
8 months ago by dsull ★ 4.0k
0
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0
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319
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Comment: Comment: problem in cyverse kallisto & sleuth apps
8 months ago by dsull ★ 4.0k
1
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1
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1.1k
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Answer: Answer: How to use kallisto correctly?
8 months ago by dsull ★ 4.0k
0
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0
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440
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Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
8 months ago by dsull ★ 4.0k
0
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0
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320
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Comment: Comment: Will Kallisto generate different result based on the same fastq files?
8 months ago by dsull ★ 4.0k
1
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0
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586
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Answer: Answer: Top/best RNAseq workflow including anlaysis results for function annotation
8 months ago by dsull ★ 4.0k
0
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0
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422
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Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
9 months ago by dsull ★ 4.0k
1
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0
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760
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
0
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0
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760
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
1
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0
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314
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Comment: Comment: Best Pipeline for De novo transcriptome SC-RNAseq
9 months ago by dsull ★ 4.0k
0
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1
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760
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
2
votes
1
reply
760
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
2
votes
1
reply
760
views
Answer: Answer: Issues with newer Kallisto versions (aka 0.46.1)
9 months ago by dsull ★ 4.0k
1
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1
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475
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Comment: Comment: Stranded or not stranded Fasq data
9 months ago by dsull ★ 4.0k
1
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1
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1.1k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
10 months ago by dsull ★ 4.0k
0
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2
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1.1k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
10 months ago by dsull ★ 4.0k
1
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1
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1.1k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
10 months ago by dsull ★ 4.0k
0
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0
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811
views
Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
10 months ago by dsull ★ 4.0k
1
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1
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811
views
Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
10 months ago by dsull ★ 4.0k
397 results • Page 2 of 8
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