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Comment: Comment: How to do differential expression without having replicates
3 months ago by dsull ★ 4.2k
1
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1
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1.6k
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Comment: Comment: Aberrant splicing in bulk RNAseq
3 months ago by dsull ★ 4.2k
1
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1
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1.6k
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Comment: Comment: Aberrant splicing in bulk RNAseq
3 months ago by dsull ★ 4.2k
3
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0
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844
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Comment: Comment: What are Differentially Expressed Genes ?!!
3 months ago by dsull ★ 4.2k
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1
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351
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Comment: Comment: How to summarize the expression of a gene when having expression data from diffe
4 months ago by dsull ★ 4.2k
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1
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528
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
4 months ago by dsull ★ 4.2k
1
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0
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489
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
4 months ago by dsull ★ 4.2k
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0
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1.7k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.2k
0
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0
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1.7k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
4 months ago by dsull ★ 4.2k
0
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0
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722
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Comment: Comment: Is it possible to convert transcript-level to gene-level dataset to use it in DE
4 months ago by dsull ★ 4.2k
1
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1
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722
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
4 months ago by dsull ★ 4.2k
2
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0
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404
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Answer: Answer: Circular deBuijn Graph
5 months ago by dsull ★ 4.2k
1
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0
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914
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Comment: Comment: How to get transcriptome reference?
5 months ago by dsull ★ 4.2k
1
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0
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914
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Answer: Answer: How to get transcriptome reference?
5 months ago by dsull ★ 4.2k
1
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1
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1.5k
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Comment: Comment: downloading raw scRNA seq data from NCBI
5 months ago by dsull ★ 4.2k
0
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0
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1.5k
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Comment: Comment: downloading raw scRNA seq data from NCBI
5 months ago by dsull ★ 4.2k
0
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0
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1.2k
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Comment: Comment: A Computer Scientist who wants to start Bioinformatics
5 months ago by dsull ★ 4.2k
0
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0
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786
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Comment: Comment: is there any tool for SRA metadata analysis?
5 months ago by dsull ★ 4.2k
0
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1
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902
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Comment: Comment: Issues with chromosome file in kallisto
5 months ago by dsull ★ 4.2k
2
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1
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557
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
5 months ago by dsull ★ 4.2k
1
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1
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902
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Answer: Answer: Issues with chromosome file in kallisto
5 months ago by dsull ★ 4.2k
1
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1
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786
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Comment: Comment: is there any tool for SRA metadata analysis?
5 months ago by dsull ★ 4.2k
2
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1
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446
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
5 months ago by dsull ★ 4.2k
1
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0
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489
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Comment: Comment: Sleuth analysis with only using Kallisto abundance.tsv files no HDF5 files
5 months ago by dsull ★ 4.2k
0
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0
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740
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Comment: Comment: FPKM file differentilly gene anaylsis
5 months ago by dsull ★ 4.2k
2
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1
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347
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
5 months ago by dsull ★ 4.2k
2
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1
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1.1k
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Comment: Comment: Building index with kallisto, keeps getting killed.
5 months ago by dsull ★ 4.2k
2
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1
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1.1k
views
Answer: Answer: Building index with kallisto, keeps getting killed.
5 months ago by dsull ★ 4.2k
1
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1
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740
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Answer: Answer: FPKM file differentilly gene anaylsis
6 months ago by dsull ★ 4.2k
1
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0
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454
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Comment: Comment: Random forest with DE genes
6 months ago by dsull ★ 4.2k
2
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1
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454
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Answer: Answer: Random forest with DE genes
6 months ago by dsull ★ 4.2k
2
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0
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298
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
6 months ago by dsull ★ 4.2k
1
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1
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1.1k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
6 months ago by dsull ★ 4.2k
0
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1
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430
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Comment: Comment: Tools for strand direction detection RNA-Seq
6 months ago by dsull ★ 4.2k
2
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0
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430
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Comment: Comment: Tools for strand direction detection RNA-Seq
6 months ago by dsull ★ 4.2k
0
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1
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1.7k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
0
votes
0
replies
1.7k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
0
votes
0
replies
1.7k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
1
vote
1
reply
1.7k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
1
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1
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384
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
7 months ago by dsull ★ 4.2k
0
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0
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1.7k
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Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
0
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0
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1.7k
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Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
1
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1
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1.7k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
1
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0
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658
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Comment: Comment: Kallisto on identical transcript
8 months ago by dsull ★ 4.2k
1
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1
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658
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Answer: Answer: Kallisto on identical transcript
8 months ago by dsull ★ 4.2k
1
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1
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342
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Comment: Comment: Can you use kallisto to process GRO-seq data?
8 months ago by dsull ★ 4.2k
0
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0
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1.5k
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Comment: Comment: Kallisto bustools index
8 months ago by dsull ★ 4.2k
0
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0
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1.5k
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Comment: Comment: Kallisto bustools index
8 months ago by dsull ★ 4.2k
0
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1
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334
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Comment: Comment: Normalize and perform differential expression analysis for two sets of transcrip
9 months ago by dsull ★ 4.2k
2
votes
1
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907
views
Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
9 months ago by dsull ★ 4.2k
429 results • Page 2 of 9
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