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Answer: Answer: DESeq2 and normalization
11 months ago by dsull ★ 7.3k
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2.0k
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Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
12 months ago by dsull ★ 7.3k
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1
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495
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Answer: Answer: DEG (Differential expression gene) analysis
12 months ago by dsull ★ 7.3k
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0
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861
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Answer: Answer: scRNAseq normalization
12 months ago by dsull ★ 7.3k
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385
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Answer: Answer: STAR --sjdbGTFfile in alignment step
12 months ago by dsull ★ 7.3k
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738
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Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
12 months ago by dsull ★ 7.3k
4
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892
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Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
12 months ago by dsull ★ 7.3k
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1.0k
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Answer: Answer: Would reaching out to local labs and startups help with my career transition?
13 months ago by dsull ★ 7.3k
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1.2k
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Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 13 months ago by 45k • written 13 months ago by ★ 7.3k
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471
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Answer: Answer: Using tophat2 output for kallisto
13 months ago by dsull ★ 7.3k
2
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815
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Answer: Answer: bulk seq vs. sc-seq
13 months ago by dsull ★ 7.3k
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1.2k
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Answer: Answer: Differential expression analysis with very high duplication rate
13 months ago by dsull ★ 7.3k
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0
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761
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Answer: Answer: How to do DESeq2 on Kallisto Data
13 months ago by dsull ★ 7.3k
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1.5k
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Answer: Answer: RNA seq, correlation, gene expression, STAR count
13 months ago by dsull ★ 7.3k
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2.1k
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Answer: Answer: I would like to exclude rRNA in RSEM and quantify it.
14 months ago by dsull ★ 7.3k
3
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1
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638
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Answer: Answer: Using Expression of a Gene as a Linear Regression Variable
14 months ago by dsull ★ 7.3k
2
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1
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901
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Answer: Answer: STAR index generation killed after "inserting junctions into the genome indices"
updated 14 months ago by 87k • written 14 months ago by ★ 7.3k
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947
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Answer: Answer: Kallisto-Bustools Output prpblems
15 months ago by dsull ★ 7.3k
2
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1
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1.2k
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Answer: Answer: Kallisto-bustools output to Seurat Object
15 months ago by dsull ★ 7.3k
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1.5k
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Answer: Answer: bwa-mem reproducibility
15 months ago by dsull ★ 7.3k
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1
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2.3k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
15 months ago by dsull ★ 7.3k
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1
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1.1k
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Answer: Answer: Should SMART-seq2 data be deduplicated in STAR?
15 months ago by dsull ★ 7.3k
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985
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Answer: Answer: Three questions about datasets
16 months ago by dsull ★ 7.3k
2
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1
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1.2k
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Answer: Answer: Smart seq3 analysis
16 months ago by dsull ★ 7.3k
2
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0
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1.1k
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Answer: Answer: salmon for gene expression quantification
16 months ago by dsull ★ 7.3k
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1.4k
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Answer: Answer: Quality filtering prior to pseudoalignment
16 months ago by dsull ★ 7.3k
3
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1
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1.2k
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Answer: Answer: Why am I getting different results with kallisto?
16 months ago by dsull ★ 7.3k
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0
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547
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Answer: Answer: Intenger encoding versus one-hot encoding for chromosome as a predictor in a neu
17 months ago by dsull ★ 7.3k
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1
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1.7k
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Answer: Answer: Best command line tool for downloading sequencing reads
17 months ago by dsull ★ 7.3k
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1
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752
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Answer: Answer: GSEA analysis for phosphoproteins
17 months ago by dsull ★ 7.3k
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1
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1.3k
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Answer: Answer: How to assign gene names after kallisto when I add GFP?
17 months ago by dsull ★ 7.3k
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0
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2.3k
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Answer: Answer: Unmapped Reads in Kallisto
17 months ago by dsull ★ 7.3k
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1
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1.7k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
18 months ago by dsull ★ 7.3k
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0
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2.2k
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Answer: Answer: Is Bioinformatics a Professional Degree?
18 months ago by dsull ★ 7.3k
2
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1
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726
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Answer: Answer: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
19 months ago by dsull ★ 7.3k
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747
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Answer: Answer: Extracting RNA sequence - single cell
19 months ago by dsull ★ 7.3k
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1
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1.6k
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Answer: Answer: Problem creating salmon index
20 months ago by dsull ★ 7.3k
1
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2
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999
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Answer: Answer: Where can I find the --chromosomes file for kallisto?
20 months ago by dsull ★ 7.3k
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1
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1.2k
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Answer: Answer: MAGeCK MLE's sgRNA efficacies always end up at 1.0
20 months ago by dsull ★ 7.3k
1
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1
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2.5k
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Answer: Answer: Threshold for a value of RPKM considered significant
20 months ago by dsull ★ 7.3k
2
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1
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931
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Answer: Answer: How to convert Kallisto output to Salmon?
21 months ago by dsull ★ 7.3k
1
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1
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2.6k
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Answer: Answer: bar chart to show a p value of 0
21 months ago by dsull ★ 7.3k
2
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2
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2.3k
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Answer: Answer: No expression found with Salmon and Kallisto
21 months ago by dsull ★ 7.3k
0
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0
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589
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Answer: Answer: Appropriate RPKM cutoff
21 months ago by dsull ★ 7.3k
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0
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1.2k
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Answer: Answer: How to generate cDNA file from genome FASTA and GTF?
22 months ago by dsull ★ 7.3k
4
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2
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1.8k
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Answer: Answer: Genes' fpkm values through cufflink
22 months ago by dsull ★ 7.3k
0
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0
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615
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Answer: Answer: Is it possible to use pseudoalignments.bam to run rMATs?
24 months ago by dsull ★ 7.3k
2
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0
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1.3k
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Answer: Answer: Confused on strandedness, what are antisense transcripts?
24 months ago by dsull ★ 7.3k
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1
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1.1k
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Answer: Answer: Multiple samples and species with kallisto bus(tools)
24 months ago by dsull ★ 7.3k
1
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1
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1.9k
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Answer: Answer: STARsolo
2.0 years ago by dsull ★ 7.3k
232 results • Page 2 of 5
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