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Answer: Answer: STARsolo
13 months ago by dsull ★ 5.8k
1
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1
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940
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Answer: Answer: kallisto -s o error
13 months ago by dsull ★ 5.8k
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0
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560
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
13 months ago by dsull ★ 5.8k
6
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1
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749
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
13 months ago by dsull ★ 5.8k
1
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2
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3.1k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by dsull ★ 5.8k
2
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1
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1.1k
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
15 months ago by dsull ★ 5.8k
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0
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875
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
15 months ago by dsull ★ 5.8k
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1
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1.1k
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
15 months ago by dsull ★ 5.8k
2
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0
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545
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Answer: Answer: Circular deBuijn Graph
15 months ago by dsull ★ 5.8k
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0
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1.4k
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Answer: Answer: How to get transcriptome reference?
15 months ago by dsull ★ 5.8k
2
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1
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773
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
16 months ago by dsull ★ 5.8k
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1
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1.3k
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Answer: Answer: Issues with chromosome file in kallisto
16 months ago by dsull ★ 5.8k
2
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1
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704
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
16 months ago by dsull ★ 5.8k
2
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1
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703
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
16 months ago by dsull ★ 5.8k
2
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1
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2.2k
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Answer: Answer: Building index with kallisto, keeps getting killed.
16 months ago by dsull ★ 5.8k
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1
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1.2k
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Answer: Answer: FPKM file differentilly gene anaylsis
16 months ago by dsull ★ 5.8k
2
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1
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743
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Answer: Answer: Random forest with DE genes
16 months ago by dsull ★ 5.8k
2
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0
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497
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
16 months ago by dsull ★ 5.8k
1
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1
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1.1k
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Answer: Answer: Kallisto on identical transcript
18 months ago by dsull ★ 5.8k
2
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1
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1.7k
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Answer: Answer: What is the best practice for the analysis of single-cell RNA-seq of mouse and h
19 months ago by dsull ★ 5.8k
2
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0
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756
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Answer: Answer: Reference that justifies/explains an FPKM cutoff
19 months ago by dsull ★ 5.8k
1
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1
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2.4k
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Answer: Answer: How to interpret a tSNE or UMAP plot to get biological conclusions ?
20 months ago by dsull ★ 5.8k
3
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0
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565
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Answer: Answer: What are the advantages of GO and KEGG? What should be as next step?
20 months ago by dsull ★ 5.8k
1
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1
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2.1k
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Answer: Answer: How to use kallisto correctly?
21 months ago by dsull ★ 5.8k
1
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0
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919
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Answer: Answer: Top/best RNAseq workflow including anlaysis results for function annotation
21 months ago by dsull ★ 5.8k
0
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0
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729
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Answer: Answer: What are the data values in qRT-PCR for statistical testing? dCT? or 2^-dCT?
21 months ago by dsull ★ 5.8k
2
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1
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1.6k
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Answer: Answer: Issues with newer Kallisto versions (aka 0.46.1)
22 months ago by dsull ★ 5.8k
0
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0
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1.4k
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Answer: Answer: Trimming adaptors and primers for RNAseq reads
23 months ago by dsull ★ 5.8k
1
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1
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888
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Answer: Answer: Unspliced matrix from RNA velocity is it similar to pre-mRNA alignment?
23 months ago by dsull ★ 5.8k
1
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0
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1.8k
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Answer: Answer: How does Salmon bootstrapping work?
23 months ago by dsull ★ 5.8k
3
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1
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2.9k
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Answer: Answer: kallisto "gene" counts
2.0 years ago by dsull ★ 5.8k
2
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1
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1.8k
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Answer: Answer: Volcano plot with aggregated p values from Sleuth
2.0 years ago by dsull ★ 5.8k
0
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1
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1.3k
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Answer: Answer: Best transcriptome assembler
2.0 years ago by dsull ★ 5.8k
0
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1
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638
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Answer: Answer: RNAseq data DEG analysis - DESeq2 normalized data
2.0 years ago by dsull ★ 5.8k
0
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1
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1.1k
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Answer: Answer: A Question About Installing sleuth (in R) of kallisto-sleuth
2.1 years ago by dsull ★ 5.8k
3
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1
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4.6k
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Answer: Answer: Methodological problems are extremely common for enrichment analysis - beware th
2.1 years ago by dsull ★ 5.8k
2
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0
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979
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Answer: Answer: SMARTseq2 scRNAseq and gene length normalization
2.1 years ago by dsull ★ 5.8k
1
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1
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1.5k
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Answer: Answer: RNA velocity similar mtx for spliced and unspliced region (dropseq)
2.2 years ago by dsull ★ 5.8k
1
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1
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718
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Answer: Answer: Prior to alignment of RNA-seq data
2.2 years ago by dsull ★ 5.8k
2
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1
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1.7k
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Answer: Answer: Why does TCGA RNA-seq pipeline starts from a BAM file?
2.2 years ago by dsull ★ 5.8k
1
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0
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603
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Answer: Answer: Quantifying expression levels of IsoSeq reads with Kallisto
2.3 years ago by dsull ★ 5.8k
3
votes
0
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778
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Answer: Answer: Deseq2
2.3 years ago by dsull ★ 5.8k
2
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1
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536
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Answer: Answer: Is there any way to make p-value high if correlation has negative value?
2.3 years ago by dsull ★ 5.8k
1
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1
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1.0k
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Answer: Answer: EM algorithm in Kallisto
2.6 years ago by dsull ★ 5.8k
1
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0
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1.2k
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Answer: Answer: Download TCGA and GTEX data from Xena toilHub for (full genome but for 1 cancer
2.6 years ago by dsull ★ 5.8k
9
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1
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6.9k
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Answer: Answer: Differences between SMART-seq2, SMART-seq3, and 10x
2.6 years ago by dsull ★ 5.8k
3
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1
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2.1k
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Answer: Answer: Analysis of shRNA/CRISPR screens in 2021
2.7 years ago by dsull ★ 5.8k
1
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1
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4.3k
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Answer: Answer: understanding log2fold change of 0.31 and -0.25
2.8 years ago by dsull ★ 5.8k
1
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0
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551
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Answer: Answer: Ways to mapping a transcriptome against a single gene
2.8 years ago by dsull ★ 5.8k
0
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0
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2.4k
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Answer: Answer: the relationship of ATAC-seq and H3K27ac
2.8 years ago by dsull ★ 5.8k
183 results • Page 2 of 4
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