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Answer: Answer: Kallisto-bustools output to Seurat Object
8 months ago by dsull ★ 6.8k
0
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1
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1.1k
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Answer: Answer: bwa-mem reproducibility
8 months ago by dsull ★ 6.8k
4
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1
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1.7k
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Answer: Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
9 months ago by dsull ★ 6.8k
1
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1
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798
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Answer: Answer: Should SMART-seq2 data be deduplicated in STAR?
9 months ago by dsull ★ 6.8k
0
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1
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771
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Answer: Answer: Three questions about datasets
9 months ago by dsull ★ 6.8k
2
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1
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854
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Answer: Answer: Smart seq3 analysis
10 months ago by dsull ★ 6.8k
2
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0
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804
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Answer: Answer: salmon for gene expression quantification
10 months ago by dsull ★ 6.8k
1
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1
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974
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Answer: Answer: Quality filtering prior to pseudoalignment
10 months ago by dsull ★ 6.8k
3
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1
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881
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Answer: Answer: Why am I getting different results with kallisto?
10 months ago by dsull ★ 6.8k
1
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0
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410
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Answer: Answer: Intenger encoding versus one-hot encoding for chromosome as a predictor in a neu
10 months ago by dsull ★ 6.8k
1
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1
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1.3k
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Answer: Answer: Best command line tool for downloading sequencing reads
11 months ago by dsull ★ 6.8k
0
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1
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599
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Answer: Answer: GSEA analysis for phosphoproteins
11 months ago by dsull ★ 6.8k
1
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1
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889
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Answer: Answer: How to assign gene names after kallisto when I add GFP?
11 months ago by dsull ★ 6.8k
1
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0
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2.0k
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Answer: Answer: Unmapped Reads in Kallisto
11 months ago by dsull ★ 6.8k
0
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1
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1.3k
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Answer: Answer: Can one sample t.test be used to determine statistical significance for log2FC v
12 months ago by dsull ★ 6.8k
0
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0
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1.7k
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Answer: Answer: Is Bioinformatics a Professional Degree?
12 months ago by dsull ★ 6.8k
2
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1
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574
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Answer: Answer: Is it possible to detect fusion genes by either stranded or unstranded RNA-seq?
12 months ago by dsull ★ 6.8k
0
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1
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634
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Answer: Answer: Extracting RNA sequence - single cell
13 months ago by dsull ★ 6.8k
1
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1
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1.2k
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Answer: Answer: Problem creating salmon index
13 months ago by dsull ★ 6.8k
1
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2
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846
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Answer: Answer: Where can I find the --chromosomes file for kallisto?
14 months ago by dsull ★ 6.8k
1
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1
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909
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Answer: Answer: MAGeCK MLE's sgRNA efficacies always end up at 1.0
14 months ago by dsull ★ 6.8k
1
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1
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2.1k
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Answer: Answer: Threshold for a value of RPKM considered significant
14 months ago by dsull ★ 6.8k
2
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1
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735
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Answer: Answer: How to convert Kallisto output to Salmon?
14 months ago by dsull ★ 6.8k
1
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1
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2.0k
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Answer: Answer: bar chart to show a p value of 0
14 months ago by dsull ★ 6.8k
2
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2
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1.9k
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Answer: Answer: No expression found with Salmon and Kallisto
14 months ago by dsull ★ 6.8k
0
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0
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484
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Answer: Answer: Appropriate RPKM cutoff
15 months ago by dsull ★ 6.8k
0
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0
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883
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Answer: Answer: How to generate cDNA file from genome FASTA and GTF?
15 months ago by dsull ★ 6.8k
4
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2
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1.4k
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Answer: Answer: Genes' fpkm values through cufflink
15 months ago by dsull ★ 6.8k
0
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0
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476
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Answer: Answer: Is it possible to use pseudoalignments.bam to run rMATs?
17 months ago by dsull ★ 6.8k
2
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0
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966
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Answer: Answer: Confused on strandedness, what are antisense transcripts?
17 months ago by dsull ★ 6.8k
1
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1
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903
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Answer: Answer: Multiple samples and species with kallisto bus(tools)
18 months ago by dsull ★ 6.8k
1
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1
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1.6k
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Answer: Answer: STARsolo
18 months ago by dsull ★ 6.8k
1
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1
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1.1k
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Answer: Answer: kallisto -s o error
18 months ago by dsull ★ 6.8k
1
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0
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671
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Answer: Answer: Do indexes made with cDNA fasta file contain only mRNAs?
18 months ago by dsull ★ 6.8k
6
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1
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998
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Answer: Answer: Question about aggregating p values from different DE analysis methods for the s
18 months ago by dsull ★ 6.8k
1
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2
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4.0k
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Answer: Answer: How do one analyze data from SMART-Seq stranded kit (v4)?
18 months ago by dsull ★ 6.8k
2
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1
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1.3k
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Answer: Answer: Tools/pipeline for analysis of smart-seq3 data
19 months ago by dsull ★ 6.8k
1
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0
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1.0k
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Answer: Answer: Can I add TPM values of Isoforms of the same gene to get total gene expression?
20 months ago by dsull ★ 6.8k
1
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1
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1.2k
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Answer: Answer: Is it possible to convert transcript-level to gene-level dataset to use it in DE
20 months ago by dsull ★ 6.8k
2
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0
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622
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Answer: Answer: Circular deBuijn Graph
20 months ago by dsull ★ 6.8k
1
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0
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1.6k
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Answer: Answer: How to get transcriptome reference?
20 months ago by dsull ★ 6.8k
2
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1
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873
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Answer: Answer: Does the bootstrap in kallisto affect the BAM files?
21 months ago by dsull ★ 6.8k
1
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1
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1.5k
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Answer: Answer: Issues with chromosome file in kallisto
21 months ago by dsull ★ 6.8k
2
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1
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829
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Answer: Answer: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
21 months ago by dsull ★ 6.8k
2
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1
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833
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Answer: Answer: How to use Sleuth for Kallisto results in one directory?
21 months ago by dsull ★ 6.8k
2
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1
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2.7k
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Answer: Answer: Building index with kallisto, keeps getting killed.
21 months ago by dsull ★ 6.8k
1
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1
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1.4k
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Answer: Answer: FPKM file differentilly gene anaylsis
21 months ago by dsull ★ 6.8k
2
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1
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892
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Answer: Answer: Random forest with DE genes
21 months ago by dsull ★ 6.8k
2
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0
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588
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Answer: Answer: Understanding how-are-we-stranded-here and salmon parameters
21 months ago by dsull ★ 6.8k
1
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1
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1.3k
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Answer: Answer: Kallisto on identical transcript
23 months ago by dsull ★ 6.8k
214 results • Page 2 of 5
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