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Comment: Comment: FPKM file differentilly gene anaylsis
5 months ago by dsull ★ 4.2k
2
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1.1k
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Comment: Comment: Building index with kallisto, keeps getting killed.
5 months ago by dsull ★ 4.2k
1
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436
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Comment: Comment: Random forest with DE genes
5 months ago by dsull ★ 4.2k
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1
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1.1k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
5 months ago by dsull ★ 4.2k
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1
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424
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Comment: Comment: Tools for strand direction detection RNA-Seq
6 months ago by dsull ★ 4.2k
2
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0
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424
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Comment: Comment: Tools for strand direction detection RNA-Seq
6 months ago by dsull ★ 4.2k
0
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1
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1.7k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
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0
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1.7k
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Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
0
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0
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1.7k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
1
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1
reply
1.7k
views
Comment: Comment: What does the fragment length (-l) argument in Kallisto actually do?
6 months ago by dsull ★ 4.2k
1
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1
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376
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Comment: Comment: Should I skip trimming, and do deseq2 directly if fastqc only shows adapters.
6 months ago by dsull ★ 4.2k
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0
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1.6k
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Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
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0
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1.6k
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Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
1
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1
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1.6k
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Comment: Comment: How to choose parameters for kallisto single end mode?
7 months ago by dsull ★ 4.2k
1
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0
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642
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Comment: Comment: Kallisto on identical transcript
7 months ago by dsull ★ 4.2k
1
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1
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337
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Comment: Comment: Can you use kallisto to process GRO-seq data?
8 months ago by dsull ★ 4.2k
0
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0
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1.5k
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Comment: Comment: Kallisto bustools index
8 months ago by dsull ★ 4.2k
0
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0
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1.5k
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Comment: Comment: Kallisto bustools index
8 months ago by dsull ★ 4.2k
0
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1
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333
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Comment: Comment: Normalize and perform differential expression analysis for two sets of transcrip
8 months ago by dsull ★ 4.2k
1
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0
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455
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Comment: Comment: Statistical exams in case of low replicate number in RNAseq analysis
9 months ago by dsull ★ 4.2k
2
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0
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1.3k
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
9 months ago by dsull ★ 4.2k
1
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1
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1.3k
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Comment: Comment: How to interpret a tSNE or UMAP plot to get biological conclusions ?
9 months ago by dsull ★ 4.2k
0
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0
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1.1k
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Comment: Comment: Understanding TCGA Pancancer data from cBioPortal
9 months ago by dsull ★ 4.2k
0
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0
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708
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Comment: Comment: HT-seq CPTAC,RNA-seq
9 months ago by dsull ★ 4.2k
0
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1
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708
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Comment: Comment: HT-seq CPTAC,RNA-seq
9 months ago by dsull ★ 4.2k
0
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1
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708
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Comment: Comment: HT-seq CPTAC,RNA-seq
9 months ago by dsull ★ 4.2k
2
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0
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451
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Comment: Comment: Why do I get a positive gene expression with qPCR for one my genes but in with w
9 months ago by dsull ★ 4.2k
1
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1
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1.1k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
10 months ago by dsull ★ 4.2k
1
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1
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1.1k
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Comment: Comment: About normalization of the datasets from Harmonized TCGA data
10 months ago by dsull ★ 4.2k
2
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0
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893
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Comment: Comment: 96% of reads aligned to the genome, but only 40% to the transcriptome?
10 months ago by dsull ★ 4.2k
0
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0
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344
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Comment: Comment: problem in cyverse kallisto & sleuth apps
10 months ago by dsull ★ 4.2k
0
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0
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472
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Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
10 months ago by dsull ★ 4.2k
0
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0
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337
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Comment: Comment: Will Kallisto generate different result based on the same fastq files?
10 months ago by dsull ★ 4.2k
1
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0
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887
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
11 months ago by dsull ★ 4.2k
0
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0
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887
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
11 months ago by dsull ★ 4.2k
1
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0
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350
views
Comment: Comment: Best Pipeline for De novo transcriptome SC-RNAseq
11 months ago by dsull ★ 4.2k
0
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1
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887
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Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
11 months ago by dsull ★ 4.2k
2
votes
1
reply
887
views
Comment: Comment: Issues with newer Kallisto versions (aka 0.46.1)
11 months ago by dsull ★ 4.2k
1
vote
1
reply
512
views
Comment: Comment: Stranded or not stranded Fasq data
11 months ago by dsull ★ 4.2k
1
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1
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1.3k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
12 months ago by dsull ★ 4.2k
0
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2
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1.3k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
12 months ago by dsull ★ 4.2k
1
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1
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1.3k
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Comment: Comment: Survival or Correlation analysis based on Xena UCSC RSEM FPKM/TPM
12 months ago by dsull ★ 4.2k
0
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0
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907
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Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
12 months ago by dsull ★ 4.2k
1
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1
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907
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Comment: Comment: Is it possible to calculate TPM using 10X Genomics public data?
12 months ago by dsull ★ 4.2k
1
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0
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499
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Comment: Comment: How to filter .fa file by gene_biotype
12 months ago by dsull ★ 4.2k
1
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0
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759
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Comment: Comment: Help with kallisto-bustools: how to interpret the inspect.json output file
12 months ago by dsull ★ 4.2k
0
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0
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1.3k
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Comment: Comment: Kallisto and Salmon give different results
12 months ago by dsull ★ 4.2k
0
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0
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1.3k
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Comment: Comment: Kallisto and Salmon give different results
12 months ago by dsull ★ 4.2k
1
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0
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2.6k
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Comment: Comment: Why NB distribution is preferred in RNA-Seq while normal distribution is preferr
12 months ago by dsull ★ 4.2k
0
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0
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589
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Comment: Comment: Differential expression analysis using Lung cancer CPTAC RNA SEQ Data
12 months ago by dsull ★ 4.2k
283 results • Page 2 of 6
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