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Posts by jiaobingke
... The document of bowtie2 says that higher mapping quality means more unique alignment. I used bowtie2 to align my 2B-RAD sequence ( a method of simplified whole genome sequence. Read length is 27 bp) to genome sequence. If a read can align to A position of genome without any mismatch, and also ali ...
... BamDeal can calculate depth of four bases in every locus of reference genome. It is a full featured software for operating bam files. Other functions may facilitate your research. https://github.com/BGI-shenzhen/BamDeal ...
... I came across the same question as you do. I convert the data.frame of my own data into a genotype object using the Devon Ryan's suggestion and It works! There is a **as.genotype()** function in genetics package.I use this function to convert the normal data.frame to a genotype object. The example i ...
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