User: gracie

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gracie10
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10
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New User
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Last seen:
5 months ago
Joined:
2 years, 7 months ago
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k*********@gmail.com

Posts by gracie

<prev • 7 results • page 1 of 1 • next >
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Gene Set Enrichment between two dataset
... Dear all, I want to perform gene set enrichment analysis between two datasets. There are packages for GO or KEGG pathway enrichment but I could not find one to calculate enrichment score between user given geneset and genelist. Is there any package for that? Thank you ...
r language gsea rna-seq written 7 months ago by gracie10 • updated 7 months ago by ewre220
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pathway analysis tools
... Hi, I looking for tools for the pathway analysis; upstream and downstream analysis and/or pathway enrichment for high-throughput data similar to ingunity pathway analysis. It doesn't have to be freeware yet I want more comprehensive tool especially suitable for miRNA analysis. ...
ipa mirna written 18 months ago by gracie10 • updated 18 months ago by Denise - Open Targets4.8k
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CNA vs mRNA Expression level
... Hi, I am comparing CNA data with mRNA expression level. For some genes there is no correlation between copy number and mRNA expression level and even for some there is negative relation (low copy number yet high mRNA expression). I found some papers stating same situation but I could not find any ...
cna tcga written 19 months ago by gracie10 • updated 15 months ago by igor7.4k
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Comment: C: Trying to check plasmid alignment
... Thanks, it worked . ...
written 21 months ago by gracie10
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Trying to check plasmid alignment
... Hi, I got a plasmid for overexpression but before going further I would like to check the everything is correct, with no significant insertions or deletions. I got sorted .bam files and .genome file for the vector and uploaded to the igv. Although I could detect SNPs and deletions, I couldnot fig ...
plasmid bam igv written 21 months ago by gracie10
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Comment: C: Wig Files to Interval Files
... Thanks for answer. I don't have access to raw files. They have only uploaded wig files. Can I still use MACS2? ...
written 2.6 years ago by gracie10
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Wig Files to Interval Files
... Hi I am new in ChipSeq analysis and I am working on an online dataset. There is only wig files generated from MACS peak calling. However I need interval files with start site, end site, FDR etc. Is there anyway to convert wig files to interval files? Or any other way to obtain genomic intervals f ...
chip-seq written 2.6 years ago by gracie10 • updated 2.6 years ago by liartom0

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