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3
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942
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Answer: Answer: What does PCA results signify?
17 months ago by Martombo ★ 3.1k
1
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1
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809
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Answer: Answer: featureCounts for WGS instead of RNA-seq
2.6 years ago by Martombo ★ 3.1k
1
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2
replies
4.1k
views
Answer: Answer: weird MAplot or volcano plot of DESeq2 diff result
2.7 years ago by Martombo ★ 3.1k
3
votes
1
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990
views
Answer: Answer: My bioinformatics story
2.7 years ago by Martombo ★ 3.1k
1
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1
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2.2k
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Answer: Answer: How do we process Kallisto output (continuous real values) for DESEQ2 analysis (
2.7 years ago by Martombo ★ 3.1k
3
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1
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829
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Answer: Answer: are there GO families?
2.8 years ago by Martombo ★ 3.1k
1
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0
replies
3.5k
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Answer: Answer: Searching a venn diagram online tool
2.8 years ago by Martombo ★ 3.1k
1
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1
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1.7k
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Answer: Answer: Tools for screening the influence/importance of covariates in multidimensional d
2.8 years ago by Martombo ★ 3.1k
0
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2
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1.6k
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Answer: Answer: Samtools view does not output all reads
3.0 years ago by Martombo ★ 3.1k
1
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1
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1.5k
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Answer: A: Covariate correction which data take for downstream analysis?
3.1 years ago by Martombo ★ 3.1k
0
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0
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1.8k
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Answer: Answer: minor introns database
updated 2.0 years ago by 43k • written 3.4 years ago by ★ 3.1k
0
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0
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2.0k
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Answer: C: Bowtie1 Options For Mirna
updated 3.4 years ago by 43k • written 10.1 years ago by ★ 3.1k
4
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1
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4.0k
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Answer: C: what is tAKR in the last of htseq results.
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.1k
1
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0
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6.3k
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Answer: A: After run Cufflinks - cuffdiff there is no information about isoforms, TSS, CDS.
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.1k
4
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1
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5.7k
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Answer: A: microRNA transcription start site prediction
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 3.1k
3
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0
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25k
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Answer: A: Retrieving Fasta Sequences From Ncbi Using Biopython
updated 4.4 years ago by 43k • written 11.2 years ago by ★ 3.1k
0
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1
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1.4k
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Answer: C: Interpretation problem at PCA plot for detecting batch effect
4.4 years ago by Martombo ★ 3.1k
0
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1
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4.1k
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Answer: A: Annotating RNA-Seq exon junctions
updated 4.4 years ago by 43k • written 8.5 years ago by ★ 3.1k
0
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0
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4.9k
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Answer: A: DESEQ2: How can I convert ensembl gene id's to HGNC gene names.
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 3.1k
2
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1
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2.0k
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Answer: A: How ViennaRNA Package deal with character other than AUGC in RNA secondary struc
updated 4.4 years ago by 43k • written 8.6 years ago by ★ 3.1k
3
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0
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2.7k
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Answer: C: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a mast
4.5 years ago by Martombo ★ 3.1k
2
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1
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2.4k
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Answer: C: Iteration to count the number of raw reads
4.8 years ago by Martombo ★ 3.1k
1
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0
replies
779
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Answer: A: Co-expression analysis for genes coexpressed with gene X, genes X and Y, etc.
5.0 years ago by Martombo ★ 3.1k
0
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0
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1.3k
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Answer: A: RNA-binding motifs matching
5.4 years ago by Martombo ★ 3.1k
1
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0
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840
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Answer: A: comparing two ratios in RNASeq data
5.5 years ago by Martombo ★ 3.1k
3
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0
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1.9k
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Answer: A: Quantifying repetitive elements in RNA-seqs
5.5 years ago by Martombo ★ 3.1k
2
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1
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2.1k
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Answer: C: DESEQ2 control vs multiple treatment
5.5 years ago by Martombo ★ 3.1k
2
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0
replies
2.4k
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Answer: A: The tools to plot the saturation curve for RNA-Seq
5.6 years ago by Martombo ★ 3.1k
2
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2
replies
2.4k
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Answer: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
5.9 years ago by Martombo ★ 3.1k
0
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0
replies
1.0k
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Answer: A: Mutation in one gene in TCGA data
5.9 years ago by Martombo ★ 3.1k
1
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1
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1.8k
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Answer: A: project of MutsigCV/ MuSic
6.1 years ago by Martombo ★ 3.1k
1
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1
reply
1.4k
views
Answer: A: Identifying enriched pathways that overlap among a range of databases
6.1 years ago by Martombo ★ 3.1k
1
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0
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3.5k
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Answer: C: On the significance of the overlap between lists of genes
6.1 years ago by Martombo ★ 3.1k
1
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0
replies
4.4k
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Answer: A: RNA-Seq DGE using PCA components as covariate
6.2 years ago by Martombo ★ 3.1k
1
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2
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3.5k
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Answer: C: Why are DESeq2 size factors not null in case of sparse count matrix?
6.2 years ago by Martombo ★ 3.1k
2
votes
1
reply
4.2k
views
Answer: C: Size difference between Bam file and sort-bam file
6.2 years ago by Martombo ★ 3.1k
1
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1
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4.5k
views
Answer: A: Many DESeq2 P values are 0 thus preventing generation of a rank list for GSEA
6.2 years ago by Martombo ★ 3.1k
2
votes
0
replies
1.1k
views
Answer: A: Interpreting the output of an mRNA structural motif search algorithm
6.2 years ago by Martombo ★ 3.1k
3
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0
replies
1.4k
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Answer: A: Trimmomatic destroys right-hand paired-end sequences, how to avoid?
6.2 years ago by Martombo ★ 3.1k
2
votes
1
reply
20k
views
Answer: A: chart title in plotly (R)
6.3 years ago by Martombo ★ 3.1k
1
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0
replies
3.2k
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Answer: A: How to get each exon counts from TCGA
6.4 years ago by Martombo ★ 3.1k
0
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0
replies
33k
views
Answer: A: In simple words - what is k-mer??
6.4 years ago by Martombo ★ 3.1k
4
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1
reply
9.0k
views
Answer: A: Why Warning: reads with missing mate encountered is occured in HTSeq?
6.4 years ago by Martombo ★ 3.1k
1
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1
reply
6.8k
views
Answer: A: DESeq2: Find differentially expressed genes specific to one condition
6.9 years ago by Martombo ★ 3.1k
6
votes
2
replies
8.6k
views
Answer: A: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
7.5 years ago by Martombo ★ 3.1k
2
votes
1
reply
3.6k
views
Answer: A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
7.8 years ago by Martombo ★ 3.1k
2
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1
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2.1k
views
Answer: A: CLIP-Seq read density
7.9 years ago by Martombo ★ 3.1k
0
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0
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7.9k
views
Answer: Answer: How to remove adapters using Trimmomatic software?
updated 21 months ago by 43k • written 8.2 years ago by ★ 3.1k
4
votes
1
reply
4.8k
views
Answer: C: Is there a limit to the p-value & q-value for cuffdiff gene_exp.diff?
8.2 years ago by Martombo ★ 3.1k
0
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1
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4.7k
views
Answer: A: how to add a pseduo gene into a GTF file?
8.3 years ago by Martombo ★ 3.1k
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