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3
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2.1k
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Answer: Answer: featureCounts isn't working how I expect
updated 3.0 years ago by 43k • written 8.4 years ago by ★ 3.1k
3
votes
1
reply
1.9k
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Answer: C: transcripts.gtf files size vs. merged.gtf
8.5 years ago by Martombo ★ 3.1k
3
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0
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3.1k
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Answer: A: DESeq estimateSize factor, if one sample has 0
8.5 years ago by Martombo ★ 3.1k
0
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1
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5.3k
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Answer: A: GO analysis and the universe set of genes
8.5 years ago by Martombo ★ 3.1k
1
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0
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4.5k
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Answer: A: -1 exon frame in UCSC gene table
8.5 years ago by Martombo ★ 3.1k
0
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1
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2.7k
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Answer: Answer: Best tool for Quality Assessment for Next Generation Sequencing Data?
updated 19 months ago by 43k • written 8.6 years ago by ★ 3.1k
0
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1
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12k
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Answer: Answer: correcting for a batch in DESeq2
updated 19 months ago by 43k • written 8.6 years ago by ★ 3.1k
1
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0
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3.7k
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Answer: A: Gene in ncbi
8.7 years ago by Martombo ★ 3.1k
1
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0
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3.5k
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Answer: Answer: Hi blog how to calculate differntial expression analysis if thre is no replicate
updated 15 months ago by 43k • written 8.9 years ago by ★ 3.1k
1
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1
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3.6k
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Answer: Answer: R script to extract sequences using seqinr returns Error Subscript out of bounds
updated 21 months ago by 43k • written 8.9 years ago by ★ 3.1k
3
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2
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2.7k
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Answer: Answer: replace first column based on third column in modeled PDB file
updated 15 months ago by 43k • written 8.9 years ago by ★ 3.1k
2
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1
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2.8k
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Answer: C: How to view and analyze BAM files from SOLiD Bioscope alignment
9.0 years ago by Martombo ★ 3.1k
2
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1
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3.7k
views
Answer: Answer: Deseq2 error using HTSeq input for 10 samples with 3 replicates each
updated 21 months ago by 43k • written 9.0 years ago by ★ 3.1k
2
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1
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2.8k
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Answer: A: Why is the quality of contigs better with a merged file than separated files? Us
9.0 years ago by Martombo ★ 3.1k
7
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1
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7.2k
views
Answer: Answer: What is the normalization w.r.t to gene expression counts or values?
updated 22 months ago by 43k • written 9.0 years ago by ★ 3.1k
5
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1
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3.9k
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Answer: Answer: Tophat --max-multihits option
updated 22 months ago by 43k • written 9.0 years ago by ★ 3.1k
1
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0
replies
1.8k
views
Answer: Answer: minor introns database
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 3.1k
0
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1
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2.6k
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Answer: Answer: Could a "complete" RNA-Seq database feasibly exclude some protein-coding transcr
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 3.1k
3
votes
0
replies
5.5k
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Answer: A: Why Is Tophat Reporting Secondary Alignments Even When The Option To Do So Is Tu
9.2 years ago by Martombo ★ 3.1k
0
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1
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2.6k
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Answer: A: Cutoff of reads in htseq
9.3 years ago by Martombo ★ 3.1k
2
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1
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2.3k
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Answer: Answer: ERROR RNA SEQ QC analysis step
9.4 years ago by Martombo ★ 3.1k
3
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0
replies
5.8k
views
Answer: Answer: Comparative boxplots with R
updated 2.4 years ago by 43k • written 9.5 years ago by ★ 3.1k
1
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2
replies
4.6k
views
Answer: Answer: Pipeline to get htseq read counts, ignoring alternative splicing
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 3.1k
1
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0
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3.9k
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Answer: Answer: Where can I find mirna primary transcripts and their genomic coordinates?
updated 2.2 years ago by 43k • written 9.5 years ago by ★ 3.1k
0
votes
0
replies
2.9k
views
Answer: Answer: Need a pseudocode for image-analysis
updated 2.2 years ago by 43k • written 9.6 years ago by ★ 3.1k
2
votes
0
replies
4.0k
views
Answer: Answer: Pirnas Sequence Files In Fasta Format For Rat And Mapping Small Rna Seq Reads
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.1k
3
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1
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4.6k
views
Answer: Answer: How can I change the color and font size for just one node in cytoscape3 ?
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 3.1k
2
votes
3
replies
1.5k
views
Answer: C: How to use R to achieve u test
9.7 years ago by Martombo ★ 3.1k
0
votes
1
reply
4.6k
views
Answer: Answer: Microarray meta analysis with SOFT datasets
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 3.1k
1
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0
replies
2.6k
views
Answer: Answer: Purifying selection M7 and M8 models
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.1k
4
votes
3
replies
5.2k
views
Answer: A: DESeq differential expression
9.8 years ago by Martombo ★ 3.1k
0
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1
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7.5k
views
Answer: Answer: Have anybody converted exome bam files to .tdf files for visualization in IGV?
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 3.1k
1
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1
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4.5k
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Answer: A: Optimized parameters for trimming single-end reads using Trimmomatic
9.8 years ago by Martombo ★ 3.1k
2
votes
1
reply
6.0k
views
Answer: A: finding differentially expressed genes in three arm treatment RNA seq data
9.9 years ago by Martombo ★ 3.1k
0
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1
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3.0k
views
Answer: C: How To Check That Tophat Works Well
10.0 years ago by Martombo ★ 3.1k
2
votes
1
reply
3.1k
views
Answer: Answer: Venn Diagram From Cap3 Output
updated 24 months ago by 43k • written 10.0 years ago by ★ 3.1k
5
votes
0
replies
5.1k
views
Answer: A: Cufflinks -G And -G Difference?
10.1 years ago by Martombo ★ 3.1k
0
votes
0
replies
3.6k
views
Answer: A: Mirdeep2 Quantifier Module Output Files
10.1 years ago by Martombo ★ 3.1k
14
votes
3
replies
32k
views
Answer: A: Sjdboverhang Option In Star
10.1 years ago by Martombo ★ 3.1k
1
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1
reply
3.3k
views
Answer: A: Finding Mirna Binding Site In Transcriptome Of An Organisim
10.2 years ago by Martombo ★ 3.1k
0
votes
0
replies
3.2k
views
Answer: A: Linking Transcription Factors To Gene Promoters
10.2 years ago by Martombo ★ 3.1k
4
votes
2
replies
3.8k
views
Answer: A: Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
10.2 years ago by Martombo ★ 3.1k
2
votes
0
replies
4.1k
views
Answer: A: Plot Table With All Replicates In Cuffdiff Output With Cummerbund
10.3 years ago by Martombo ★ 3.1k
2
votes
1
reply
8.8k
views
Answer: A: Mirdeep2 Quantifier Module Output
10.3 years ago by Martombo ★ 3.1k
2
votes
0
replies
3.9k
views
Answer: A: Mirtron Predicted Targets In Humans
10.7 years ago by Martombo ★ 3.1k
2
votes
0
replies
2.4k
views
Answer: A: Comparing Single Amino Acid Use
11.2 years ago by Martombo ★ 3.1k
2
votes
2
replies
13k
views
Answer: A: Getting Gene Names From Genbank Ids
updated 12.1 years ago by 49k • written 12.1 years ago by ★ 3.1k
6
votes
0
replies
6.4k
views
Answer: A: Help For Paml About The Positive Selection
12.2 years ago by Martombo ★ 3.1k
98 results • Page 2 of 2
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