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4
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836
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Bioinformatics in Graviton2 AWS
genome assembly aws graviton2
written 15 months ago by ▴ 30
0
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0
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191
views
Understanding Kfamscan
K0 kfamscan kegg protein
8 months ago by vm.higareda ▴ 30
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0
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1.4k
views
Comment: Comment: N50 for de novo assembly result is too short
16 months ago by vm.higareda ▴ 30
3
votes
1
reply
570
views
How to download specific genomes
comparative ncbi genomes genomics assembly
updated 23 months ago by 127k • written 23 months ago by ▴ 30
1
vote
1
reply
933
views
taxonomic classification with rna-seq data
taxonomy rnaseq Kraken kaiju IMSA+A
3.3 years ago by vm.higareda ▴ 30
0
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1
reply
2.4k
views
Comment: C: Problem to run checkm.
3.4 years ago by vm.higareda ▴ 30
0
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0
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962
views
Comment: C: what is Kmer coverage
3.6 years ago by vm.higareda ▴ 30
0
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2
replies
962
views
what is Kmer coverage
sequence genome metagenome Assembly SPAdes
updated 3.6 years ago by ★ 2.0k • written 3.6 years ago by ▴ 30
2
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1
reply
2.0k
views
kallisto with reference genome
RNA-Seq kallisto
4.2 years ago by vm.higareda ▴ 30
0
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2
replies
1.3k
views
HTseq-counts not counting correctly?
RNA-Seq htseq Drosophila
4.5 years ago by vm.higareda ▴ 30
0
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1
reply
2.4k
views
Comment: C: counts in rna-seq cpm
5.1 years ago by vm.higareda ▴ 30
0
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5
replies
2.4k
views
counts in rna-seq cpm
RNA-Seq edgeR cpm transcriptomics data
updated 5.1 years ago by 34k • written 5.1 years ago by ▴ 30
0
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1
reply
2.4k
views
Comment: C: counts in ran-seq cpm
5.1 years ago by vm.higareda ▴ 30
1
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0
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2.7k
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Comment: C: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
5.1 years ago by vm.higareda ▴ 30
0
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0
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2.7k
views
Comment: A: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
5.1 years ago by vm.higareda ▴ 30
0
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1
reply
1.4k
views
detecting antisense transcripts
RNA-Seq strand rna illumina antisense
5.1 years ago by vm.higareda ▴ 30
0
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0
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3.0k
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Comment: C: edgeR understanding statistics
5.4 years ago by vm.higareda ▴ 30
0
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1
reply
3.0k
views
Comment: C: edgeR understanding statistics
5.4 years ago by vm.higareda ▴ 30
3
votes
6
replies
3.0k
views
edgeR understanding statistics
RNA-Seq edgeR statistics transcriptomics
updated 5.4 years ago by 84k • written 5.4 years ago by ▴ 30
0
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0
replies
24k
views
Comment: C: TMM normalization factors in RNA-seq analysis
5.5 years ago by vm.higareda ▴ 30
1
vote
2
replies
1.3k
views
enrichment analysis tools
RNA-Seq DE expression enrichment gene
updated 5.5 years ago by 7.4k • written 5.5 years ago by ▴ 30
0
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0
replies
4.1k
views
Comment: C: Strand-option in hisat2
5.8 years ago by vm.higareda ▴ 30
0
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1
reply
4.1k
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Comment: C: Strand-option in hisat2
5.8 years ago by vm.higareda ▴ 30
0
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1
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4.1k
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Comment: C: Strand-option in hisat2
5.8 years ago by vm.higareda ▴ 30
0
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0
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4.1k
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Comment: A: Strand-option in hisat2
5.8 years ago by vm.higareda ▴ 30
1
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11
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4.1k
views
Strand-option in hisat2
RNA-Seq hisat2 strand
5.8 years ago by vm.higareda ▴ 30
0
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2
replies
4.1k
views
Comment: A: Strand-option in hisat2
5.8 years ago by vm.higareda ▴ 30
0
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0
replies
994
views
basic question cuffdiff
RNA-Seq cuffdiff transcriptomics
5.8 years ago by vm.higareda ▴ 30
0
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1
reply
1.2k
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Comment: C: Inconsistency Between Cufflinks And Cuffdiff
5.8 years ago by vm.higareda ▴ 30
0
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1
reply
1.2k
views
Comment: C: Inconsistency Between Cufflinks And Cuffdiff
5.8 years ago by vm.higareda ▴ 30
0
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5
replies
1.2k
views
Inconsistency Between Cufflinks And Cuffdiff
RNA-Seq cufflinks rna cuffdiff
updated 5.8 years ago by 97k • written 5.8 years ago by ▴ 30
0
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1
reply
4.2k
views
Comment: C: Using Hisat2 with strand specific bacteria sequences
6.5 years ago by vm.higareda ▴ 30
3
votes
2
replies
2.1k
views
Doubts about RNA-seq Cufflinks
RNA-Seq
updated 6.5 years ago by 103k • written 6.5 years ago by ▴ 30
0
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1
reply
1.2k
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Comment: C: Drosophila differential expression.
6.5 years ago by vm.higareda ▴ 30
1
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3
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1.2k
views
Drosophila differential expression.
RNA-Seq drosophila Hisat2 cufflinks cuffdiff
updated 6.5 years ago by ★ 1.6k • written 6.5 years ago by ▴ 30
0
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0
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2.4k
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Comment: C: Differential expression analysis of transcriptome data
6.6 years ago by vm.higareda ▴ 30
3
votes
5
replies
4.2k
views
Using Hisat2 with strand specific bacteria sequences
RNA-Seq alignment Forum
updated 6.6 years ago by 18k • written 6.6 years ago by ▴ 30
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