User: saber mohammadi

Reputation:
10
Status:
New User
Location:
Last seen:
3 months, 2 weeks ago
Joined:
4 years ago
Email:
s**********@gmail.com

Posts by saber mohammadi

<prev • 26 results • page 1 of 3 • next >
0
votes
2
answers
1.5k
views
2
answers
Comment: C: Memory error in python
... No, I didn't try. Sorry, I'm not an expert in python. Should I put your mentioned part of code before `read_file = pd.read_csv('intact.txt', delimiter='\t')` ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
1.5k
views
2
answers
Comment: C: Memory error in python
... import pandas as pd read_file = pd.read_csv('intact.txt', delimiter='\t') read_file.to_csv('intact.csv', index=None) ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
1.5k
views
2
answers
Memory error in python
... Hello, I want to extract the human-HCV(Hepatitis C virus) protein-protein interactions (PPI). For doing this, I have downloaded the entire content of the IntAct database as a .txt file. This .txt file has a huge size (4GB). I tried to convert this text file to a CSV file by Python and then extract j ...
python memory error protein-protein interaction written 4 months ago by saber mohammadi10 • updated 4 months ago by Mensur Dlakic6.0k
0
votes
2
answers
221
views
2
answers
Comment: C: splitting test and train data
... I appreciate your help and response. ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
221
views
2
answers
Comment: C: splitting test and train data
... Than you so much. Yes you are right. Due to my balance data set scikit-learn gave me a balanced data set after splitting even by random splitting. ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
221
views
2
answers
Comment: C: splitting test and train data
... I have removed similar sequences already by CD-HIT to reduce redundancy. I used a 40% cutoff. But I will read the article. Thank you so much for your valuable help. ...
written 4 months ago by saber mohammadi10
0
votes
0
answers
691
views
0
answers
Comment: C: Text mining software
... Hello Michael, I agree with you. I think it’s not relevant anymore. Thanks for informing me. ...
written 4 months ago by saber mohammadi10
0
votes
1
answer
2.9k
views
1
answers
Comment: C: retrieving pubmed abstracts
... Yes of course. I would be happy if I could give any help ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
221
views
2
answers
Comment: C: splitting test and train data
... Yes it’s already balanced. But I’m not sure that if it will remain balanced after splitting. It should be noted that I can do it by myself but I want to do it via python’s scikit-learn library and I’m not sure whether scikit-learn will handle this issue or not. ...
written 4 months ago by saber mohammadi10
0
votes
2
answers
221
views
2
answers
Comment: C: splitting test and train data
... If you have more instances of thermophilic class relative to instances from the another class (here the mesophile class) your results will be biased toward the class that has majority (in this example it would bias toward the thermophilic proteins). Hence, in order to obtain reliable results you sho ...
written 4 months ago by saber mohammadi10

Latest awards to saber mohammadi

Popular Question 2.3 years ago, created a question with more than 1,000 views. For what dose taxonomic distribution mean?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For retrieving pubmed abstracts
Popular Question 2.5 years ago, created a question with more than 1,000 views. For retrieving data from Pubmed by RISmed package in R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1694 users visited in the last hour