User: martinsteinegger

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Answer: A: Fast kmer reverse complement code using bit tricks
... We compute the reverse complement k-mer in [MMseqs2][1] using SIMD. The trick is to use two lookup tables (lookup1 and lookup2) for the reverse complements. The function should be roughly 1.3x times as fast as revcomp64_v2. It can probably still be optimized more. // Compute reverse complement ...
written 8 weeks ago by martinsteinegger10

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