Moderator: Malachi Griffith

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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
1 week ago
Joined:
6 years, 5 months ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

<prev • 479 results • page 2 of 48 • next >
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Comment: C: Exploring cancer mutation data portals
... You are most welcome. I just updated this post to include the Genomic Data Commons. This is a great resource for accessing the raw data, variant call files, etc. ...
written 11 months ago by Malachi Griffith16k
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Comment: C: Database Of Tumor Suppressors And/Or Oncogenes
... The 404 points you at this old paper version: http://nar.oxfordjournals.org/content/35/suppl_1/D721.full ...
written 16 months ago by Malachi Griffith16k
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Comment: C: What are the resources to design the most comprehensive clinical SNP chip?
... The bioRXiv for the [CIViC][1] paper lists several other useful resources that you may find helpful (mostly cancer focused): http://biorxiv.org/content/early/2016/09/01/072892 [1]: https://civic.genome.wustl.edu/#/home ...
written 19 months ago by Malachi Griffith16k
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Comment: C: Best way to obtain list of all drug-variant associations from CIViC
... Please note that both the [Data Releases section][1] and [API documentation][2] of [www.civicdb.org][3] have been substantially updated! Please let us know if you have any issues. [1]: https://civic.genome.wustl.edu/#/releases [2]: https://genome.github.io/civic-api-docs/ [3]: https://civic. ...
written 19 months ago by Malachi Griffith16k • updated 19 months ago by Obi Griffith16k
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Comment: C: CIViC - Clinical Interpretation of Variants in Cancer
... Update on licensing. The code is still licensed with MIT, but the content is now under the Creative Commons Public Domain Designation (CC0). ...
written 19 months ago by Malachi Griffith16k
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Comment: C: How To Get Phasing Status From Vcf Files
... I found this description to be the most helpful for understanding how phasing information is represented in a VCF file: http://gatkforums.broadinstitute.org/gatk/discussion/45/purpose-and-operation-of-read-backed-phasing It has nice intuitive examples of what the file actually looks like for phased ...
written 20 months ago by Malachi Griffith16k
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Answer: A: PubChem CID data retrieval
... This question could use some clarification as it is not clear what you are trying to achieve. There will not be anything like a 1-to-1 relationship between pubchem CIDs (which refer to *chemical compounds*) and Uniprot IDs (which refer to protein structures). Are you interested in interactions b ...
written 22 months ago by Malachi Griffith16k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 23 months ago by Malachi Griffith16k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 23 months ago by Malachi Griffith16k
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Comment: C: Current Topics in Genome Analysis 2016 (collection of educational lectures)
... This is an update for the 2016 version of this very popular lecture series. The old post is here: https://www.biostars.org/p/103074/. That post also includes links back to archived versions of this lecture series. It has now been going on for 14 years. ...
written 23 months ago by Malachi Griffith16k

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Teacher 8 weeks ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
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Great Question 12 weeks ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
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Appreciated 8 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
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Appreciated 11 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Great Question 11 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 11 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
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Popular Question 14 months ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
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Great Question 15 months ago, created a question with more than 5,000 views. For List Of Genome Sequencing Centers/Institutes
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