Moderator: Malachi Griffith

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Location:
Washington University School of Medicine, St. Louis, USA
Website:
http://www.malachigrif...
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Google Scholar Page
Last seen:
2 months ago
Joined:
7 years, 3 months ago
Email:
m*******@genome.wustl.edu

I am an Assistant Director of the Genome Institute, and Assistant Professor of Genetics at Washington University School of Medicine. I am conducting research in medical genomics and bioinformatics specializing in the application of molecular biology, informatics, and statistics to the study of cancer.

Posts by Malachi Griffith

<prev • 481 results • page 2 of 49 • next >
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Comment: C: Visualizing genomic data: techniques and challenges. Our interview with Dr. Mala
... Cross-link to the post with more details on the content of this course: https://www.biostars.org/p/240625/ ...
written 19 months ago by Malachi Griffith17k
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Comment: C: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
... Cross linking to the interview post related to this course for convenience: https://www.biostars.org/p/259960/ ...
written 19 months ago by Malachi Griffith17k
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Comment: C: Exploring cancer mutation data portals
... You are most welcome. I just updated this post to include the Genomic Data Commons. This is a great resource for accessing the raw data, variant call files, etc. ...
written 22 months ago by Malachi Griffith17k
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Comment: C: Database Of Tumor Suppressors And/Or Oncogenes
... The 404 points you at this old paper version: http://nar.oxfordjournals.org/content/35/suppl_1/D721.full ...
written 2.2 years ago by Malachi Griffith17k
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Comment: C: What are the resources to design the most comprehensive clinical SNP chip?
... The bioRXiv for the [CIViC][1] paper lists several other useful resources that you may find helpful (mostly cancer focused): http://biorxiv.org/content/early/2016/09/01/072892 [1]: https://civic.genome.wustl.edu/#/home ...
written 2.5 years ago by Malachi Griffith17k
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Comment: C: Best way to obtain list of all drug-variant associations from CIViC
... Please note that both the [Data Releases section][1] and [API documentation][2] of [www.civicdb.org][3] have been substantially updated! Please let us know if you have any issues. [1]: https://civic.genome.wustl.edu/#/releases [2]: https://genome.github.io/civic-api-docs/ [3]: https://civic. ...
written 2.5 years ago by Malachi Griffith17k • updated 2.5 years ago by Obi Griffith17k
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Comment: C: CIViC - Clinical Interpretation of Variants in Cancer
... Update on licensing. The code is still licensed with MIT, but the content is now under the Creative Commons Public Domain Designation (CC0). ...
written 2.5 years ago by Malachi Griffith17k
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Comment: C: How To Get Phasing Status From Vcf Files
... I found this description to be the most helpful for understanding how phasing information is represented in a VCF file: http://gatkforums.broadinstitute.org/gatk/discussion/45/purpose-and-operation-of-read-backed-phasing It has nice intuitive examples of what the file actually looks like for phased ...
written 2.5 years ago by Malachi Griffith17k
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Answer: A: PubChem CID data retrieval
... This question could use some clarification as it is not clear what you are trying to achieve. There will not be anything like a 1-to-1 relationship between pubchem CIDs (which refer to *chemical compounds*) and Uniprot IDs (which refer to protein structures). Are you interested in interactions b ...
written 2.7 years ago by Malachi Griffith17k
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Comment: C: Current Topics in Genome Analysis 2014 (collection of educational lectures)
... A new post for the updated 2016 series is now available here: https://www.biostars.org/p/191658/. ...
written 2.8 years ago by Malachi Griffith17k

Latest awards to Malachi Griffith

Great Question 3 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Appreciated 3 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Scholar 7 months ago, created an answer that has been accepted. For A: Finding Mutation Hotspot At Level Of Amino Acid By Spatial Proximity In Protein
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Great Question 11 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 12 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
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Great Question 13 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Popular Question 13 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
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Great Question 21 months ago, created a question with more than 5,000 views. For Current Topics in Genome Analysis 2014 (collection of educational lectures)
Good Answer 21 months ago, created an answer that was upvoted at least 5 times. For A: How Does Argonaute Recognize Mirnas?
Popular Question 21 months ago, created a question with more than 1,000 views. For Analysis of dbGaP data on the cloud
Appreciated 23 months ago, created a post with more than 5 votes. For A: How Does Argonaute Recognize Mirnas?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Bioinformatics Scientist At Compendia Bioscience, Ann Arbor, Mi
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