User: Linkrw12

gravatar for Linkrw12
Linkrw1220
Reputation:
20
Status:
New User
Location:
Philadelphia, PA
Website:
https://www.linkedin.c...
Last seen:
14 hours ago
Joined:
1 year, 10 months ago
Email:
r************@yahoo.com

Posts by Linkrw12

<prev • 7 results • page 1 of 1 • next >
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Comment: C: How to have frequency displayed on the Y axis in weblogo
... did you try checking the "frequency plot" box on the options? ...
written 10 weeks ago by Linkrw1220
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Answer: A: Muscle alignment problem
... Your answer looks like the MSA is in Phylip format, which will truncate the sequence header to the first 10 characters. If you need to keep in Phylip format, you should opt for a relaxed Phylip format, which cannot be performed in MUSCLE, unfortunately... However, you can output your MSA in a FAS ...
written 7 months ago by Linkrw1220
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Comment: C: How can I split a file in R?
... I would recommend asking this on Stack Overflow. You'd probably get a better response there provided that you give a reproducible example of the code you've already tried ...
written 7 months ago by Linkrw1220
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Answer: A: Install DESeq2 and edgeR with Anaconda
... Adding this for completeness sake: Sometimes Bioconductor packages will not be in the bioconda repo and when I tried Sean's solution, my computer yelled at me (I also don't have sudo privaleges). I ended up downloading the source code into the anaconda R library directory and installing it from the ...
written 8 months ago by Linkrw1220
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Comment: C: unhashable type: 'SeqRecord'
... You're right! I modified the end of the find_kmer function and it worked wonderfully! Thank you :) ...
written 22 months ago by Linkrw1220
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Comment: C: unhashable type: 'SeqRecord'
... I would like to do that, but unfortunately, I need all the information in the 'ReqSeq' object to funnel the output to a fasta file. On my home computer, the 'ReqSeq' object would know that the function is being applied to the sequence found within the ReqSeq object (without the .seq extension) and m ...
written 22 months ago by Linkrw1220
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unhashable type: 'SeqRecord'
... Hello everybody, Using Python, I'm trying to create 30-mers from DNA sequences in a fasta file in order to run a local BLAST analysis on it later. So the end goal is to have a list that contains many lists of these 30-mer sequences that I can turn into a fasta file. To do this, I need to maintain ...
python biopython written 22 months ago by Linkrw1220 • updated 22 months ago by WouterDeCoster29k

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