User: mozart.marins12

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Posts by mozart.marins12

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Comment: C: Tag size in MACS and MACS2
... Ans is it possible somehow to change the tag size in MACS2 in the galaxy plataform? ...
written 2.1 years ago by mozart.marins1210
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Tag size in MACS and MACS2
... Please, I need some clarification about using MACS in the Galaxy plataform. I have BAM files from my chip-seq experiment and the peak calling was performed with tag size 50. I have runned again the BAM files in MACS in the galaxy platform but using a tag size 36. The late gave me results that fit be ...
macs chip-seq written 2.1 years ago by mozart.marins1210 • updated 2.1 years ago by Ian5.3k
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Comment: C: EnrichR parameters used for transcription factors enrichment
... Dear DeCoster, Thanks . I've read your post and read the papers but this info is not there. And in the enrichR site there's no explanation for this. Thank you for your reply. I will try contact withe the authors. ...
written 2.2 years ago by mozart.marins1210
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Comment: C: EnrichR parameters used for transcription factors enrichment
... When you use other tools such as opossum and homer, you have to define the region around the tss you want to be analyzed. And in enrichR this is not possible. It seems to be a fixed parameter. Iwould like to know thisbfor rwsults comparison. ...
written 2.2 years ago by mozart.marins1210
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EnrichR parameters used for transcription factors enrichment
... Please, I using EnrichR to find enriched transcription factors in a set of down and up regulated genes. It gives me back mice results but I woudl like to know which are the parameters used such as the region around TSS (-2000/200?), the lenght of the motifs analyzed (8.10. 12?), is there a GC correc ...
gene genome rna-seq written 2.2 years ago by mozart.marins1210 • updated 2.2 years ago by WouterDeCoster35k
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Comment: C: DAVID inconsistent results
... Yes, I read that post...but I think it´s a different problem. Thanks, Mozart ...
written 2.3 years ago by mozart.marins1210
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DAVID inconsistent results
... Please, I am new here and not a great bioinformatician. In DAVID tools for GO analysis, I have runned a list of 1500 genes in the morning and it gave a GO list of genes and in the pathway analysis it showed Kegg, BIOCARTA and Panther...afterwards, the same list runned in the afternoon, it gave a d ...
david written 2.3 years ago by mozart.marins1210
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Answer: A: Inconsistent numbers when using Kegg pathway analysis via DAVID?
... Hi, Please, I am new here and not a great bioinformatician. In DAVID tools, I have runned a list of 1500 genes in the morning and it gave a GO list of genes and in the pathway analysis it shoed Kegg, BIOCARTA and Panther...afterwards, the same list runned in the afternoon, it gave a different ...
written 2.3 years ago by mozart.marins1210

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