User: Jack

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Jack60
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Posts by Jack

<prev • 22 results • page 1 of 3 • next >
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Opposite of enrichment analysis
... So, we do enrichment analysis in order to see if something that we found is more than expected. But, how can we check for the opposite? Something that we found is less than expected. ...
enrichment written 8 hours ago by Jack60 • updated 8 hours ago by Qroid20
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Get DrugBank data with Python
... I'm trying to get a list of all `FDA-approved` drugs from DrugBank. Is there a `Python` or `R` script that can do that for me? ...
python drugbank written 4 days ago by Jack60 • updated 4 days ago by natasha.sernova2.4k
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PantherDB Molecular function to graph
... Is there a script (in either `R` or `Python`) available which will take a `Molecular function` from `PantherDB` and write it as a graph, as presented in the PantherDB website? example: and on the downloaded text file it's like: protein binding#GO:0005515;receptor binding#GO:0005102;binding#GO ...
R pantherdb python written 8 days ago by Jack60
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Generate Gene plot for region on hg19
... So, given a matrix from the HumanGenome19 project (hg19) I want to generate a plot in which I the genes and their strands will be plotted. The data from hg19 look like this: GENE CHR txStart txEnd Size STRAND RBBP8 chr18 2050000 42016610 113940 - CCND3 chr18 41902670 42016610 113940 - ...
R genes plot written 8 weeks ago by Jack60 • updated 8 weeks ago by krushnach8080
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Plot SNPs on GViz
... I have a list of snps in .txt format. only 10 snps to be exact, that appear on a certain region on chromosome 7. In my text file, I have the position of the SNP and the values I need, I just have to create the `zoomed-in` effect like in the picture below. I 'm using GViz, to plot the Ideogram of th ...
R snps gviz written 10 weeks ago by Jack60
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Comment: C: Remove text labels of variables on diagonal corrplot
... @ddiez I've updated the question. check it again. ...
written 10 weeks ago by Jack60
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Remove text labels of variables on diagonal corrplot
... How can I remove text labels from diagonal only on corrplot? my_correlation_matrix1 <- read.table("path/to/matrix", header = T) my_correlation_matrix2 <- read.table("path/to/matrix", header = T) corrplot(my_correlation_matrix1, method = "color", ...
R corrplot written 10 weeks ago by Jack60 • updated 9 weeks ago by ddiez1.5k
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Answer: A: Get hg19 coordinates of SNPs from gwas catalog
... have a look at [this][1] . at least for my project, I found what I needed. [1]: http://www.nature.com/ncomms/2015/150122/ncomms6966/extref/ncomms6966-s3.xlsx ...
written 10 weeks ago by Jack60
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Answer: A: Plot a DNA chain in R
... The answer is Gviz library and Ideogram ...
written 10 weeks ago by Jack60
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Comment: C: Plot a DNA chain in R
... @Im687 wow! Thank you! this just might be it! ...
written 10 weeks ago by Jack60

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