User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu1.8k
Reputation:
1,810
Status:
Trusted
Location:
China/Hong Kong/The University of Hong Kong
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
1 month ago
Joined:
6 years, 7 months ago
Email:
g************@gmail.com

I study Systems Biology at The University of Hong Kong.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 166 results • page 1 of 17 • next >
3
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1
answer
226
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Answer: A: Enrichpathway In ReactomePA.
... ``` > yy # # over-representation test # #...@organism human #...@ontology Reactome #...@keytype ENTREZID #...@gene chr [1:198] "64240" "6296" "196883" "153" "155" "4299" "2334" "79026" ... #...pvalues adjusted by 'BH' with cutoff <1 #...441 enriched terms found 'data.frame': 441 obs. o ...
written 10 weeks ago by Guangchuang Yu1.8k
0
votes
1
answer
519
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1
answers
Comment: C: Pathways Enrichment Analysis.
... ``` devtools::install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/enrichplot")) ``` ...
written 10 weeks ago by Guangchuang Yu1.8k
3
votes
1
answer
374
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1
answers
Answer: A: ClusterProfiler Ontology Bar plotting
... > is there any method to remove those descriptions which don't have any gene name. ``` barplot(ggo, drop=TRUE, ...) ``` You already know how to do it using `drop=TRUE` parameter. > I plotting barplot (10000 descriptions) There is no 10000 terms in level 3 of MF. > it's difficult to ...
written 12 weeks ago by Guangchuang Yu1.8k
2
votes
1
answer
519
views
1
answers
Answer: A: Pathways Enrichment Analysis.
... install the github version will works. ``` devtools::install_github("GuangchuangYu/enrichplot") ``` ...
written 3 months ago by Guangchuang Yu1.8k
0
votes
1
answer
239
views
1
answers
Answer: A: genlist for clusterprofiler
... see the tutorial on . ...
written 3 months ago by Guangchuang Yu1.8k
0
votes
1
answer
222
views
1
answers
Answer: A: Unclear Peak Annotation
... >but CLSTN2 has got 17 exons, not 10 10 is intron ...
written 3 months ago by Guangchuang Yu1.8k
0
votes
0
answers
212
views
0
answers
Comment: C: From gene list to disease ontology
... thanks for your updates. ...
written 3 months ago by Guangchuang Yu1.8k
1
vote
1
answer
703
views
1
answers
Comment: C: Chip-seq peak annotation [Chipseeker]
... yes. mouse is similar to huaman. ...
written 3 months ago by Guangchuang Yu1.8k
1
vote
1
answer
393
views
1
answers
Answer: A: Fancy dotplot for GO enrichment result display
... see my blog post three years ago, http://guangchuangyu.github.io/2015/03/david-functional-analysis-with-clusterprofiler/. ...
written 3 months ago by Guangchuang Yu1.8k
0
votes
3
answers
452
views
3
answers
Comment: C: 98.21% of input gene IDs are fail to map
... actually "PVR" is all in upper case. Is this an exception? ...
written 4 months ago by Guangchuang Yu1.8k

Latest awards to Guangchuang Yu

Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Scholar 4 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Popular Question 6 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Popular Question 11 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 11 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Appreciated 13 months ago, created a post with more than 5 votes. For A: specific string extraction use excel, R or Python
Popular Question 14 months ago, created a question with more than 1,000 views. For clusterProfiler: an R package for comparing biological themes among gene clusters
Popular Question 16 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 17 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 18 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Centurion 20 months ago, created 100 posts.
Scholar 20 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Guru 20 months ago, received more than 100 upvotes.
Scholar 21 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Supporter 21 months ago, voted at least 25 times.
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 22 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Appreciated 22 months ago, created a post with more than 5 votes. For A: specific string extraction use excel, R or Python
Scholar 22 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python

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