User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu1.4k
Reputation:
1,390
Status:
Trusted
Location:
China/Hong Kong/The University of Hong Kong
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
18 hours ago
Joined:
5 years, 4 months ago
Email:
g************@gmail.com

I study Systems Biology at The University of Hong Kong.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 138 results • page 1 of 14 • next >
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Answer: A: defining consistent plot areas in ggtree
... should do the trick (`+ facet_wrap(.id~)` ) if you want x to be the same scale. ...
written 23 hours ago by Guangchuang Yu1.4k
0
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1
answer
110
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1
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Answer: A: How to extract all the terms using summary?
... If you set `pvalueCutoff=1` and `qvalueCutoff=1`, of course all result will return. Not matter it is significant or not. ...
written 11 days ago by Guangchuang Yu1.4k
2
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2
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125
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Answer: A: s pombe non-coding regions annotation
... ``` > require(GenomicFeatures) > x <- makeTxDbFromGFF("schizosaccharomyces_pombe.chr.gff3") > sapply(intronsByTranscript(x)[1:10], length) 1 2 3 4 5 6 7 8 9 10 0 0 0 0 1 0 1 1 0 0 > intronsByTranscript(x)[5] GRangesList object of length 1: $5 GRanges object with ...
written 16 days ago by Guangchuang Yu1.4k
1
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1
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137
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Comment: C: how to give column names for a data in R
... ```r nms <- readLines("your_file_that_stores_colname_one_at_each_line") colnames(data) <- nms ``` ...
written 5 weeks ago by Guangchuang Yu1.4k
0
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1
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249
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Answer: A: Is it possible to recreate clusterProfiler plots using my own pathway data?
... maybe you can try `merge_result` function, see and corresponding source code in . ...
written 8 weeks ago by Guangchuang Yu1.4k
1
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1
answer
261
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Answer: A: ChIPSeeker - problem with GO enrichment analysis
... pathway.d3TCRp300 <- enrichPathway(gene.d3TCRp300, organism="mouse") You need to have `org.Mm.eg.db` installed. ...
written 9 weeks ago by Guangchuang Yu1.4k
1
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1
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230
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Answer: A: Gene set size effect on Gene ontology Semantic Similarity score
... should not have bias on gene set size. please refer to the vignette, which describe the calculation in details. ...
written 10 weeks ago by Guangchuang Yu1.4k
0
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1
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220
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Comment: C: ggtree "open_tree" not found in linux version
... you don't need to install devel version for using `open_tree`. You must install an outdated versioin. see and checkout your installation. ...
written 10 weeks ago by Guangchuang Yu1.4k
2
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1
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220
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Answer: A: ggtree "open_tree" not found in linux version
... see . ...
written 10 weeks ago by Guangchuang Yu1.4k
0
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1.2k
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Comment: C: ggtree: phylogenetic tree visualization and annotation
... pls google search it before posting question. see . ...
written 10 weeks ago by Guangchuang Yu1.4k

Latest awards to Guangchuang Yu

Popular Question 5 weeks ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 12 weeks ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 12 weeks ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
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Centurion 5 months ago, created 100 posts.
Scholar 5 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Guru 5 months ago, received more than 100 upvotes.
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