User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu2.3k
Reputation:
2,260
Status:
Trusted
Location:
China/Guangzhou/Southern Medical University
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
2 days, 10 hours ago
Joined:
8 years ago
Email:
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Professor of Bioinformatics at Southern Medical University.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 190 results • page 1 of 19 • next >
4
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Answer: A: R ggtree adding metadata based on tree structure
... The first column should be node numbers or labels for ggtree to link your data to the tree. Please refer to our paper, . There are a number of examples in the supplemental file. ...
written 18 days ago by Guangchuang Yu2.3k
2
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1
answer
120
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1
answers
Answer: A: clusterProfiler enrichGO gene size filter with minGSSize doesn't seem to work
... The `minGSSize` and `maxGSSize` are used to restrict gene set size not for your gene list. If we looking at the formula, , they apply to the `M`. ...
written 24 days ago by Guangchuang Yu2.3k
1
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1
answer
371
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1
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Answer: A: How do I annotate a tree with boostrap scores and color code clades in ggtree?
... see an example in for integrating bootstrap value. For data integration, we have published a paper, https://academic.oup.com/mbe/article/35/12/3041/5142656, with lots of examples in the supplemental files. ...
written 3 months ago by Guangchuang Yu2.3k
0
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1
answer
458
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1
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Comment: C: R color tree ggtree
... updated link, . ...
written 6 months ago by Guangchuang Yu2.3k
2
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1
answer
602
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1
answers
Answer: A: clusterProfiler: cnetplot with interactive output
... it is indeed not available in the latest release as all the visualization methods were rewrote from scratch using ggplot2. However, if you want to use the old methods, you can use the [doseplot](https://github.com/GuangchuangYu/doseplot) package. ...
written 6 months ago by Guangchuang Yu2.3k
2
votes
2
answers
331
views
2
answers
Answer: A: ClusterProfiler fails to find GO terms
... ``` > genes<-c("ENSG00000198886","ENSG00000198888","ENSG00000198763","ENSG00000198840","ENSG00000212907","ENSG00000198786","ENSG00000198695","ENSG00000198727","ENSG00000198804","ENSG00000198712","ENSG00000198938","ENSG00000198899","ENSG00000228253") > > > ego<-enrichGO(genes, O ...
written 7 months ago by Guangchuang Yu2.3k
1
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1
answer
1.0k
views
1
answers
Answer: A: R tidytree ggtree error
... you need to install Bioconductor 3.8. ...
written 10 months ago by Guangchuang Yu2.3k
1
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0
answers
1.1k
views
0
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Comment: C: Dotplot for filtered pathways result
... of course it is possible, try msigdbr + clusterProfiler ...
written 10 months ago by Guangchuang Yu2.3k
1
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2
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667
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2
answers
Answer: A: Plot lines color change in plotAvgProf2 [ChIPseeker]
... see `?ggplot2::scale_color_manual` ...
written 12 months ago by Guangchuang Yu2.3k
1
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1
answer
444
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1
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Answer: C: Showing more terms in the result of GESA by ClusterProfiler
... Try to use different `qvalueCutoff` value as cut off. ...
written 13 months ago by Guangchuang Yu2.3k • updated 13 months ago by zx87548.4k

Latest awards to Guangchuang Yu

Teacher 18 days ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 20 days ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 3 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 3 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 6 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 7 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Great Question 10 months ago, created a question with more than 5,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 13 months ago, created an answer that has been accepted. For A: How to filter genes in R
Scholar 13 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 14 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Popular Question 15 months ago, created a question with more than 1,000 views. For DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
Appreciated 16 months ago, created a post with more than 5 votes. For ggtree: phylogenetic tree visualization and annotation
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Popular Question 18 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Scholar 21 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Popular Question 24 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 2.1 years ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Popular Question 2.3 years ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 2.4 years ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: specific string extraction use excel, R or Python
Popular Question 2.6 years ago, created a question with more than 1,000 views. For clusterProfiler: an R package for comparing biological themes among gene clusters

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