User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu2.3k
Reputation:
2,270
Status:
Trusted
Location:
China/Guangzhou/Southern Medical University
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
4 months, 2 weeks ago
Joined:
8 years, 5 months ago
Email:
g************@gmail.com

Professor of Bioinformatics at Southern Medical University.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 190 results • page 1 of 19 • next >
4
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381
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Answer: A: R ggtree adding metadata based on tree structure
... The first column should be node numbers or labels for ggtree to link your data to the tree. Please refer to our paper, . There are a number of examples in the supplemental file. ...
written 5 months ago by Guangchuang Yu2.3k
2
votes
1
answer
240
views
1
answers
Answer: A: clusterProfiler enrichGO gene size filter with minGSSize doesn't seem to work
... The `minGSSize` and `maxGSSize` are used to restrict gene set size not for your gene list. If we looking at the formula, , they apply to the `M`. ...
written 5 months ago by Guangchuang Yu2.3k
1
vote
1
answer
686
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1
answers
Answer: A: How do I annotate a tree with boostrap scores and color code clades in ggtree?
... see an example in for integrating bootstrap value. For data integration, we have published a paper, https://academic.oup.com/mbe/article/35/12/3041/5142656, with lots of examples in the supplemental files. ...
written 7 months ago by Guangchuang Yu2.3k
0
votes
1
answer
737
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1
answers
Comment: C: R color tree ggtree
... updated link, . ...
written 11 months ago by Guangchuang Yu2.3k
2
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1
answer
989
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1
answers
Answer: A: clusterProfiler: cnetplot with interactive output
... it is indeed not available in the latest release as all the visualization methods were rewrote from scratch using ggplot2. However, if you want to use the old methods, you can use the [doseplot](https://github.com/GuangchuangYu/doseplot) package. ...
written 11 months ago by Guangchuang Yu2.3k
2
votes
2
answers
498
views
2
answers
Answer: A: ClusterProfiler fails to find GO terms
... ``` > genes<-c("ENSG00000198886","ENSG00000198888","ENSG00000198763","ENSG00000198840","ENSG00000212907","ENSG00000198786","ENSG00000198695","ENSG00000198727","ENSG00000198804","ENSG00000198712","ENSG00000198938","ENSG00000198899","ENSG00000228253") > > > ego<-enrichGO(genes, O ...
written 12 months ago by Guangchuang Yu2.3k
1
vote
1
answer
1.3k
views
1
answers
Answer: A: R tidytree ggtree error
... you need to install Bioconductor 3.8. ...
written 14 months ago by Guangchuang Yu2.3k
1
vote
0
answers
2.0k
views
0
answers
Comment: C: Dotplot for filtered pathways result
... of course it is possible, try msigdbr + clusterProfiler ...
written 14 months ago by Guangchuang Yu2.3k
1
vote
2
answers
896
views
2
answers
Answer: A: Plot lines color change in plotAvgProf2 [ChIPseeker]
... see `?ggplot2::scale_color_manual` ...
written 16 months ago by Guangchuang Yu2.3k
1
vote
1
answer
542
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1
answers
Answer: C: Showing more terms in the result of GESA by ClusterProfiler
... Try to use different `qvalueCutoff` value as cut off. ...
written 18 months ago by Guangchuang Yu2.3k • updated 17 months ago by zx87549.1k

Latest awards to Guangchuang Yu

Scholar 4 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 5 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 7 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 7 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 11 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 12 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Great Question 14 months ago, created a question with more than 5,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 17 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 17 months ago, created an answer that has been accepted. For A: How to filter genes in R
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 19 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Popular Question 20 months ago, created a question with more than 1,000 views. For DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
Appreciated 21 months ago, created a post with more than 5 votes. For ggtree: phylogenetic tree visualization and annotation
Popular Question 22 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 24 months ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Scholar 2.2 years ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Popular Question 2.4 years ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Popular Question 2.7 years ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 2.7 years ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python

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