User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu1.4k
Reputation:
1,400
Status:
Trusted
Location:
China/Hong Kong/The University of Hong Kong
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
7 hours ago
Joined:
5 years, 6 months ago
Email:
g************@gmail.com

I study Systems Biology at The University of Hong Kong.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 143 results • page 1 of 15 • next >
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Answer: A: organism choose of clusterProfiler
... If using the gene IDs you provided, it should not works for `hsa` as these gene IDs are not belong to human. ``` > g [1] "33157" "3772540" "33202" "33374" "53544" "33396" > select(org.Hs.eg.db, keys=g, keytype="ENTREZID", columns='ENTREZID') Error in .testForValidKeys(x, keys, keytype ...
written 11 days ago by Guangchuang Yu1.4k
0
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1
answer
146
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1
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Answer: A: Genomic overlap using ChIPseeker enrichPeakOverlap
... `intersect(peaks1, peaks2)` will give you the overlap. ...
written 20 days ago by Guangchuang Yu1.4k
0
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1
answer
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Answer: A: How to add column name in facet_plot of ggtree
... see ...
written 20 days ago by Guangchuang Yu1.4k
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658
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Comment: C: ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualiz
... From KEGG website. You should know these ID better than me as this is the species you are studying. ...
written 25 days ago by Guangchuang Yu1.4k
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Comment: C: ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualiz
... gene ID not match, as indicated in the **message**. ``` > xx$dme00051 [1] "Dmel_CG10638" "Dmel_CG10688" "Dmel_CG10863" "Dmel_CG1129" "Dmel_CG12289" [6] "Dmel_CG12766" "Dmel_CG1982" "Dmel_CG2171" "Dmel_CG3001" "Dmel_CG31692" [11] "Dmel_CG32849" "Dmel_CG33102" "Dmel_CG3400" "Dmel_CG3495" " ...
written 4 weeks ago by Guangchuang Yu1.4k
1
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1
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159
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Answer: A: defining consistent plot areas in ggtree
... should do the trick (`+ facet_wrap(.id~)` ) if you want x to be the same scale. ...
written 5 weeks ago by Guangchuang Yu1.4k
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1
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153
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Answer: A: How to extract all the terms using summary?
... If you set `pvalueCutoff=1` and `qvalueCutoff=1`, of course all result will return. Not matter it is significant or not. ...
written 6 weeks ago by Guangchuang Yu1.4k
2
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168
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Answer: A: s pombe non-coding regions annotation
... ``` > require(GenomicFeatures) > x <- makeTxDbFromGFF("schizosaccharomyces_pombe.chr.gff3") > sapply(intronsByTranscript(x)[1:10], length) 1 2 3 4 5 6 7 8 9 10 0 0 0 0 1 0 1 1 0 0 > intronsByTranscript(x)[5] GRangesList object of length 1: $5 GRanges object with ...
written 7 weeks ago by Guangchuang Yu1.4k
1
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1
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169
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Comment: C: how to give column names for a data in R
... ```r nms <- readLines("your_file_that_stores_colname_one_at_each_line") colnames(data) <- nms ``` ...
written 10 weeks ago by Guangchuang Yu1.4k
0
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1
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297
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1
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Answer: A: Is it possible to recreate clusterProfiler plots using my own pathway data?
... maybe you can try `merge_result` function, see and corresponding source code in . ...
written 3 months ago by Guangchuang Yu1.4k

Latest awards to Guangchuang Yu

Popular Question 4 weeks ago, created a question with more than 1,000 views. For clusterProfiler: an R package for comparing biological themes among gene clusters
Popular Question 10 weeks ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 4 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 5 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Centurion 6 months ago, created 100 posts.
Scholar 6 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Guru 6 months ago, received more than 100 upvotes.
Scholar 7 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Supporter 7 months ago, voted at least 25 times.
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 8 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Appreciated 8 months ago, created a post with more than 5 votes. For A: specific string extraction use excel, R or Python
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Scholar 9 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 9 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
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Teacher 22 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python

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