User: Guangchuang Yu

gravatar for Guangchuang Yu
Guangchuang Yu2.2k
Reputation:
2,180
Status:
Trusted
Location:
China/Guangzhou/Southern Medical University
Website:
https://guangchuangyu....
Twitter:
guangchuangyu
Scholar ID:
Google Scholar Page
Last seen:
1 month, 1 week ago
Joined:
7 years, 7 months ago
Email:
g************@gmail.com

Professor of Bioinformatics at Southern Medical University.

Email: guangchuangyu@gmail.com

Posts by Guangchuang Yu

<prev • 187 results • page 1 of 19 • next >
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Comment: C: R color tree ggtree
... updated link, . ...
written 7 weeks ago by Guangchuang Yu2.2k
2
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1
answer
221
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Answer: A: clusterProfiler: cnetplot with interactive output
... it is indeed not available in the latest release as all the visualization methods were rewrote from scratch using ggplot2. However, if you want to use the old methods, you can use the [doseplot](https://github.com/GuangchuangYu/doseplot) package. ...
written 8 weeks ago by Guangchuang Yu2.2k
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2
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Answer: A: ClusterProfiler fails to find GO terms
... ``` > genes<-c("ENSG00000198886","ENSG00000198888","ENSG00000198763","ENSG00000198840","ENSG00000212907","ENSG00000198786","ENSG00000198695","ENSG00000198727","ENSG00000198804","ENSG00000198712","ENSG00000198938","ENSG00000198899","ENSG00000228253") > > > ego<-enrichGO(genes, O ...
written 12 weeks ago by Guangchuang Yu2.2k
1
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1
answer
683
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Answer: A: R tidytree ggtree error
... you need to install Bioconductor 3.8. ...
written 5 months ago by Guangchuang Yu2.2k
1
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0
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460
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Comment: C: Dotplot for filtered pathways result
... of course it is possible, try msigdbr + clusterProfiler ...
written 5 months ago by Guangchuang Yu2.2k
1
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2
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446
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2
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Answer: A: Plot lines color change in plotAvgProf2 [ChIPseeker]
... see `?ggplot2::scale_color_manual` ...
written 7 months ago by Guangchuang Yu2.2k
1
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1
answer
337
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Answer: C: Showing more terms in the result of GESA by ClusterProfiler
... Try to use different `qvalueCutoff` value as cut off. ...
written 8 months ago by Guangchuang Yu2.2k • updated 8 months ago by zx87547.5k
0
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1
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Answer: A: extract gseaResult in clusterprofiler
... `as.data.frame` to convert the object to data frame? ...
written 8 months ago by Guangchuang Yu2.2k
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Comment: C: ClusterProfiler cannot map any gene
... see and the package vignette. You need to specify the ID type if it is supported. ...
written 9 months ago by Guangchuang Yu2.2k
1
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Comment: C: ClusterProfiler cannot map any gene
... no it does work with gene symbol if you specify the `keyType = "SYMBOL"` ...
written 9 months ago by Guangchuang Yu2.2k

Latest awards to Guangchuang Yu

Scholar 8 weeks ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 12 weeks ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Great Question 5 months ago, created a question with more than 5,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 8 months ago, created an answer that has been accepted. For A: How to filter genes in R
Scholar 8 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Scholar 9 months ago, created an answer that has been accepted. For A: R:Cannot install snpStats packages
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Popular Question 10 months ago, created a question with more than 1,000 views. For DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
Appreciated 11 months ago, created a post with more than 5 votes. For ggtree: phylogenetic tree visualization and annotation
Popular Question 13 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Get All The Genes In A Pathway (E.G. Kegg)
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: GO Enrichment Analysis representation
Scholar 16 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Popular Question 19 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Popular Question 23 months ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Scholar 23 months ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Appreciated 2.1 years ago, created a post with more than 5 votes. For A: specific string extraction use excel, R or Python
Popular Question 2.2 years ago, created a question with more than 1,000 views. For clusterProfiler: an R package for comparing biological themes among gene clusters
Popular Question 2.3 years ago, created a question with more than 1,000 views. For ggtree: phylogenetic tree visualization and annotation
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: specific string extraction use excel, R or Python
Scholar 2.5 years ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python
Scholar 2.6 years ago, created an answer that has been accepted. For A: specific string extraction use excel, R or Python

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