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1
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replies
3.3k
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Answer:
Answer: Functional enrichment analysis of bacteria
2.6 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
4.3k
views
Answer:
Answer: relevel the clusterProfiler object
2.6 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
5.5k
views
Answer:
Answer: How to get KEGG pathway names in KEGG enrichment analysis using clusterprofiler
2.6 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
4.8k
views
Answer:
Answer: clusterProfiler and enrichplot: visualising groupGO results with individual gene
2.6 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
11k
views
Answer:
Answer: What's the difference between enrichKEGG and gseKEGG
2.6 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
1.4k
views
Answer:
Answer: GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
2.6 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
1.7k
views
Answer:
Answer: GO and KEGG pathway analysis of lncRNA genes
2.6 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
1.1k
views
Answer:
Answer: clusterProfiler gene list retrieval
2.6 years ago by
Guangchuang Yu
★ 2.6k
2
votes
0
replies
2.5k
views
Answer:
Answer: Issues with enricher() function from clusterProfiler
2.6 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
6.1k
views
Answer:
Answer: clusterprofiler: How to extract genes of a specific GO-term/pathway
2.6 years ago by
Guangchuang Yu
★ 2.6k
2
votes
0
replies
9.8k
views
Answer:
A: How do I add circles to the tips of a phylogenetic tree that have white fill and
3.3 years ago by
Guangchuang Yu
★ 2.6k
0
votes
1
reply
3.2k
views
Answer:
A: plotting trees in R: node labels from nexus tree files
3.3 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
18k
views
Answer:
A: showing specific GO pathways in the dotplot or cnetplot
3.4 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
6.9k
views
Answer:
A: How to use WEGO (Web Gene Ontology Annotation Plot)
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Guangchuang Yu
★ 2.6k
2
votes
3
replies
6.3k
views
Answer:
A: GeneBank accession 2 Entrez gene id
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
3.9k
views
Answer:
A: ChIPseeker Error: Attempting to annotatePeaks
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
11k
views
Answer:
A: Converting .narrowPeak file to GRanges for use in Bioconductor ChIPseeker
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
Guangchuang Yu
★ 2.6k
4
votes
0
replies
4.9k
views
Answer:
A: R ggtree adding metadata based on tree structure
4.4 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
6.2k
views
Answer:
A: clusterProfiler enrichGO gene size filter with minGSSize doesn't seem to work
4.4 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
4.5k
views
Answer:
A: How do I annotate a tree with boostrap scores and color code clades in ggtree?
4.6 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
6.1k
views
Answer:
A: clusterProfiler: cnetplot with interactive output
4.9 years ago by
Guangchuang Yu
★ 2.6k
2
votes
2
replies
3.8k
views
Answer:
A: ClusterProfiler fails to find GO terms
5.0 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
3.3k
views
Answer:
A: R tidytree ggtree error
5.2 years ago by
Guangchuang Yu
★ 2.6k
1
vote
2
replies
3.6k
views
Answer:
A: Plot lines color change in plotAvgProf2 [ChIPseeker]
5.4 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
1.6k
views
Answer:
C: Showing more terms in the result of GESA by ClusterProfiler
updated 5.4 years ago by
zx8754
11k • written 5.5 years ago by
Guangchuang Yu
★ 2.6k
2
votes
0
replies
3.4k
views
Answer:
A: extract gseaResult in clusterprofiler
5.5 years ago by
Guangchuang Yu
★ 2.6k
2
votes
0
replies
20k
views
Answer:
A: How to convert fasta file format to phylip file format
5.6 years ago by
Guangchuang Yu
★ 2.6k
0
votes
2
replies
4.6k
views
Answer:
A: GSEA results change in clusterProfiler
5.6 years ago by
Guangchuang Yu
★ 2.6k
3
votes
1
reply
30k
views
Answer:
A: Get All The Genes In A Pathway (E.G. Kegg)
updated 5.6 years ago by
Ram
43k • written 12.4 years ago by
Guangchuang Yu
★ 2.6k
0
votes
1
reply
3.2k
views
Answer:
A: mgeneSim function in GOSemSim package: error: r in go_matrix[gos[[i]], gos[[j]]]
5.7 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
2.9k
views
Answer:
A: Downstream proportions are not identical in vennpie and upsetplot results
5.7 years ago by
Guangchuang Yu
★ 2.6k
0
votes
1
reply
4.8k
views
Answer:
A: upsetplot in clusterprofiler
5.7 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
2.7k
views
Answer:
A: How to get the all the overlap information of a peak in ChIPseeker
5.7 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
5.8k
views
Answer:
A: how does ggtree interprets branch support value (e.g bootstrap value) given as n
updated 5.7 years ago by
zx8754
11k • written 5.7 years ago by
Guangchuang Yu
★ 2.6k
6
votes
1
reply
4.8k
views
Answer:
A: specific string extraction use excel, R or Python
updated 6.0 years ago by
zx8754
11k • written 9.6 years ago by
Guangchuang Yu
★ 2.6k
6
votes
1
reply
4.9k
views
Answer:
A: ClusterProfiler Ontology Bar plotting
6.0 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
3.6k
views
Answer:
A: Pathways Enrichment Analysis.
6.0 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
7.2k
views
Answer:
A: genlist for clusterprofiler
6.0 years ago by
Guangchuang Yu
★ 2.6k
0
votes
1
reply
1.3k
views
Answer:
A: Unclear Peak Annotation
6.1 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
6.4k
views
Answer:
A: Fancy dotplot for GO enrichment result display
6.1 years ago by
Guangchuang Yu
★ 2.6k
4
votes
3
replies
10k
views
Answer:
A: 98.21% of input gene IDs are fail to map
6.2 years ago by
Guangchuang Yu
★ 2.6k
3
votes
1
reply
3.3k
views
Answer:
A: PANTHER and DAVID can't recognized some Ensembl gene ID?
6.3 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
1.8k
views
Answer:
A: Error with ecolik12 enrichGO
6.3 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
3.2k
views
Answer:
A: Error while running clusterProfiler
6.4 years ago by
Guangchuang Yu
★ 2.6k
1
vote
0
replies
2.2k
views
Answer:
A: Pathways visualization for GSEA table input in ClusterProfiler package of Biocon
6.4 years ago by
Guangchuang Yu
★ 2.6k
1
vote
1
reply
3.7k
views
Answer:
A: [ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in
6.4 years ago by
Guangchuang Yu
★ 2.6k
2
votes
1
reply
2.7k
views
Answer:
A: GO enrichment - interpreting broad terms
6.7 years ago by
Guangchuang Yu
★ 2.6k
0
votes
0
replies
5.6k
views
Answer:
A: can you calculate GO enrichment from GO terms and IDs?
6.7 years ago by
Guangchuang Yu
★ 2.6k
1
vote
2
replies
3.2k
views
Answer:
A: Mac operating system for bioinformatics
6.8 years ago by
Guangchuang Yu
★ 2.6k
3
votes
1
reply
3.8k
views
Answer:
A: Chip-seq peak annotation [Chipseeker]
6.8 years ago by
Guangchuang Yu
★ 2.6k
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