User: robert.zimmermann

Reputation:
10
Status:
New User
Location:
Last seen:
5 days, 5 hours ago
Joined:
1 year, 3 months ago
Email:
r****************@univie.ac.at

Posts by robert.zimmermann

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
117
views
2
answers
Comment: C: Will lowering the LengthTol parameter increase false positive links in Orthology
... Dear Adrian, Thanks much for your comment! That's quite helpful. In fact, we are only interested in HOGs as we are using OMA as a quick way to determine gene gains, losses and duplications of a subset of genes of interest in all 5 taxa we are investigating. Note that Brachyury is a gene (also kn ...
written 8 days ago by robert.zimmermann10
1
vote
2
answers
117
views
2
answers
Will lowering the LengthTol parameter increase false positive links in Orthology Groups?
... We noticed that a key gene to our study was not placed considered in any orthology group for our OMA standalone run owing to the fact that it is a transcription factor (Brachyury) and has a shorter conserved domain. By testing on a small subset it seems like lowering the LengthTol parameter to 0.4 a ...
orthologs oma written 8 days ago by robert.zimmermann10 • updated 7 days ago by david_emms20
1
vote
2
answers
1.1k
views
2
answers
Answer: A: Pysam under pypy?
... Because this problem comes up quite frequently for me, I reimplemented a lot of the pysam functionality in python code so it could be run with pypy. Feel free to fork it and clean it up. https://github.com/nijibabulu/pypysam/ ...
written 15 months ago by robert.zimmermann10

Latest awards to robert.zimmermann

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1359 users visited in the last hour