User: Cliff Beall

gravatar for Cliff Beall
Cliff Beall440
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440
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Location:
Ohio
Last seen:
3 months, 3 weeks ago
Joined:
6 years ago
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Posts by Cliff Beall

<prev • 58 results • page 2 of 6 • next >
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Answer: A: Why add 'A' to 3' end of DNA when preparing sample
... As far as I know, this is not specific to SureSelect, it's all Illumina ligation-based protocols. When you ligate the sequencing adapters to the target insert, it helps get adapter to insert ligation, because the adapters have a T overhang on their 3' ends and can pair. The inserts or adapters liga ...
written 2.9 years ago by Cliff Beall440
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Answer: A: HIV : gtf or gff annotation
... ftp://ftp.ncbi.nlm.nih.gov/genomes/Viruses/Human_immunodeficiency_virus_1_uid15476/NC_001802.gff By the way, Manu, there are quite a few other genes in there as well: tat, rev and all that good stuff. ...
written 3.1 years ago by Cliff Beall440
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Answer: A: Crac: Funny And/Or Weird Names For Bioinformatics Tools
... I always thought Picard was a funny name. Were the authors Star Trek fans? ...
written 3.2 years ago by Cliff Beall440
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Comment: C: Crac: Funny And/Or Weird Names For Bioinformatics Tools
... Have some freebayes while you're at it. ...
written 3.2 years ago by Cliff Beall440
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Comment: C: Does CNVs follow Mendelian inheritance pattern?
... If a CNV is due to a duplication it might involve multiple chromosomal locations and might have non-Mendelian inheritance. Deletions and tandem duplications should be Mendelian. Not sure if this is the answer you need - it seems like you might not be asking about Mendelian inheritance but just gene ...
written 3.2 years ago by Cliff Beall440
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Comment: C: I'm applying for a non-PhD bioinformatics position in your lab. What do you look
... We have had some undergrad/bachelors level bioinformaticians make some nice contributions and get published in our lab. They did not have much in the way of specific prerequisites, more just being smart and a willingness to hack. By the way, if you're in Ohio or willing to move, we might want to ta ...
written 3.4 years ago by Cliff Beall440
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Differences of Bacterial Genome ftp folders at NCBI
... Hi folks, I have been wondering for a while about all the different places that one can find bacterial genomes on the NCBI ftp site. If one looks in the genome folder there are (at least) subfolders Bacteria, Bacteria_DRAFT, ASSEMBLY_BACTERIA, and HUMAN_MICROBIOM. I think I understand that Bacteria ...
genome ncbi bacteria written 3.4 years ago by Cliff Beall440
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Comment: C: Is there anyone who was a pure biologist?
... I did wet lab work for 30 years, for the last 5 have done mostly informatics. The biology background does help out occasionally.  I find programming to be a bit more rewarding than wet lab experiments on a day to day basis, you don't seem to hit walls as often. (Except when stuff won't install and y ...
written 3.6 years ago by Cliff Beall440
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Comment: C: Qiime Vs Mothur : Why Use One Over The Other?
... Just to muddy the waters, there is uParse as well: http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2604.html ...
written 3.7 years ago by Cliff Beall440
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Comment: C: Is There Any Probability To Get An Era Commons Account And Download The Original
... Just a comment that the process should go through their institution's Sponsored Projects Office or equivalent: How does a Principal Investigator (PI) get registered in eRA Commons? Once the applicant organization is registered in eRA Commons, the organization's Signing Official can register the Pr ...
written 4.1 years ago by Cliff Beall440

Latest awards to Cliff Beall

Popular Question 11 months ago, created a question with more than 1,000 views. For Postdoc in Bioinformatics of the Oral Microbiome, Ohio State University
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: HIV : gtf or gff annotation
Popular Question 18 months ago, created a question with more than 1,000 views. For Biopython Seqio - Why Is It Repeating Deflines?
Popular Question 18 months ago, created a question with more than 1,000 views. For Differences of Bacterial Genome ftp folders at NCBI
Scholar 18 months ago, created an answer that has been accepted. For A: List Of Genome Sequencing Centers/Institutes
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: HIV : gtf or gff annotation
Supporter 24 months ago, voted at least 25 times.
Scholar 2.9 years ago, created an answer that has been accepted. For A: List Of Genome Sequencing Centers/Institutes
Scholar 3.0 years ago, created an answer that has been accepted. For A: List Of Genome Sequencing Centers/Institutes
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Looking For More Data To Build A Bacterial Primer Database
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Looking For More Data To Build A Bacterial Primer Database
Teacher 3.7 years ago, created an answer with at least 3 up-votes. For A: Looking For More Data To Build A Bacterial Primer Database
Student 3.7 years ago, asked a question with at least 3 up-votes. For Biopython Seqio - Why Is It Repeating Deflines?

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