User: Bioinformatician_in_trouble

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Posts by Bioinformatician_in_trouble

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Can I map gene symbols to PDB ids?
... Is there a good tutorial for this? ...
written 4 days ago by Bioinformatician_in_trouble10
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Different pubmed search using R
... Hi all, I was trying to multiple different search using R.I was trying the RISmed package where i used c to concantenate my search terms as shown below: search_topic<-c("KRAS AND MEK inhibitor","BRAF AND BRAF inhibitors") but when i try to run it,I get the following error: Error in file(con, "r") ...
R pubmed written 12 days ago by Bioinformatician_in_trouble10
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Comment: C: Python Code to standardize gene name in CSV file
... I did not know about symbol checker.Thank you for the info. ...
written 5 months ago by Bioinformatician_in_trouble10
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Comment: C: How to Reduce Number of PUBMED hits
... Thank You! This is nice :) will explore more. ...
written 7 months ago by Bioinformatician_in_trouble10
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How to Reduce Number of PUBMED hits
... Hi everyone, Mine is a very very basic question. How can we make the Pubmed search results be less in number but accurate at the same time? I have read about the usage of quotes and AND/OR but that doesn't really seem to help.( May be i am doing something wrong?) for example: "Kras" and "cancer ". T ...
pubmed bioinformatics written 7 months ago by Bioinformatician_in_trouble10
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Comment: C: Python Code to standardize gene name in CSV file
... I can use regex for symbols. But in general i would want to replace all gene names as is given in HGNC. PD-L1 was just an example. ...
written 8 months ago by Bioinformatician_in_trouble10
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Comment: C: Python Code to standardize gene name in CSV file
... Yes, HGNC symbols. For example: My CSV file may have "TS" as an input but HGNC symbol for that is TYMS. So, I want TYMS as output. But I do not want to replace each gene symbol manually. Species is Human and the genes names are coming from Pubmed abstracts( so different authors refer genes different ...
written 8 months ago by Bioinformatician_in_trouble10
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Python Code to standardize gene name in CSV file
... Hi all, I have a CSV file that includes gene names in different formats for example: PD-L1 might be written as PDL1 or PD-L1 or PDL-1 but i want to standardize all of these to HGNC symbols using python code. Can anyone tell me how should I go about it. I know how to do it for just one gene name ( i ...
python coding hgnc gene symbol written 8 months ago by Bioinformatician_in_trouble10 • updated 6 months ago by Biostar ♦♦ 20
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Comment: C: Coloring nodes according to attribute value in Cytoscape 3
... Sorry for late reply.Thank you so much. ...
written 8 months ago by Bioinformatician_in_trouble10
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Comment: C: Coloring nodes according to attribute value in Cytoscape 3
... hi i have the same issue. How did you solve the problem? ...
written 9 months ago by Bioinformatician_in_trouble10

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