User: shrutidesai0208

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Posts by shrutidesai0208

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Comment: C: T Cell Repertoire Deep Sequencing
... For an assay in immunotherapy drug clinical trial, it mentions that deep tcr sequencing is done with RNA sequencing and DNA sequencing both. Considering the given scenario, I want to know if the data analysis steps will be different when dealing with the data from both the assays. I understand the b ...
written 15 months ago by shrutidesai02080
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T Cell Repertoire Deep Sequencing
... Currently stuck with finding the #bioinformatics related difference in #DNA sequencing and #RNA sequencing for #tcell repertoire.. Any help will be really appreciated.. ...
tcrsequencing dna-seq rna-seq written 15 months ago by shrutidesai02080 • updated 13 months ago by Biostar ♦♦ 20
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Tool BreaKMer Error - gfServer wait time exceeded
... Hi, command: python ~/BreaKmer/breakmer.py run --generate_image --indel_size 20 --gene_list ~/Reference_files/geneList350.txt --nprocessors 10 --port_number 9000 -c ~BreaKmer/breakmer.cfg The error is as below: breakmer.params - ERROR - gfServer wait time exceeded ~15 minutes, exiting I am continu ...
breakmer gfserver blat written 20 months ago by shrutidesai02080
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Annovar Output column "AAChange.knowngene" gives different values
... Annovar Output column "AAChange.knowngene" has different values for codon and AA change. eg: Chr chr7 Start 50467736 End 50467736 Ref C Alt G Func.knowngene exonic Gene.knowngene IKZF1 GeneDetail.knowngene 0 ExonicFunc.knowngene ...
annovar written 21 months ago by shrutidesai02080 • updated 21 months ago by poisonAlien2.6k
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Comment: C: Freebayes tumor vs. normal inquiry
... Hi Herzliya, I am getting the same issue and looking out for solution. Did you get turn around this? ...
written 2.1 years ago by shrutidesai02080

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