User: Alex

gravatar for Alex
Alex20
Reputation:
20
Status:
New User
Location:
America
Last seen:
4 days, 23 hours ago
Joined:
1 year, 1 month ago
Email:
z************@gmail.com

Posts by Alex

<prev • 42 results • page 1 of 5 • next >
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Add something to change the transcripts ID
... Dear Biostars friends, I am learning the programming and encountered some problems while I can't solve it now I want to add _1,_2,_3... to the transcripts ID with the same gene,my original file like this : scaffold_1 transcript 55098 57492 . + . gene_id "Seita.1G000200"; transcript_id "Seita.1G000 ...
gene sequence written 5 months ago by Alex20
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(Closed) filter and substitute gene names
... Hello Everyone, At present I have been encountered a problem.I have two files (file1 and file2), I want to use the file2 gene name to filter the file1 transcript ID which are correspond to the gene name.lastly substitute the file2 gene names using the transcript ID.such as this: file1: gene_na ...
gene written 5 months ago by Alex20 • updated 5 months ago by Pierre Lindenbaum99k
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Comment: C: Run circlize errors
... yeah,I have solved it ,Thanks ,theobroma22 Alex ...
written 6 months ago by Alex20
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Run circlize errors
... Hello,while I use my data run the circlize to plot the genomic Points track,It appear some Unexpected errors.all the points are gathered into several scaffold and some points out of track Note:6822 points are out of plotting region in sector 'scaffold_1', track '3'. Note:7642 points are out of plo ...
R written 6 months ago by Alex20 • updated 6 months ago by theobroma22980
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Comment: C: how to make a OmicCircos config files
... can you send the code to my gmail,maybe it will clearly to me,the maile is : Thanks Alex ...
written 6 months ago by Alex20 • updated 6 months ago by genomax34k
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Comment: C: how to make a OmicCircos config files
... Hi,theobroma22: It seems that not helpful,when I run db <- segAnglePo(seg.f, seg=unique(segs)),the class length and names length different Alex ...
written 6 months ago by Alex20
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how to make a OmicCircos config files
... Hi guys, At present I am plotting a circos picture using OmicCircos,while encountered some problems when made the config file,As the manual say A mapping data are an R data frame which includes values to be drawn in the graph. In the mapping data, columns 1 and 2 are segment name and position resp ...
R written 6 months ago by Alex20 • updated 6 months ago by theobroma22980
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Using ChIPseeker to annotate the plant data
... Hi everyone, At present I want to using the ChIPseeker to annotate my maize Bed files ,while I see the manual ,it's seems that have no instances to use the plant genome files to annotate plant data. so can anyone provide some good examples to use the ChIPseeker software annotate the plant bed files. ...
chip-seq written 6 months ago by Alex20
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Answer: A: De novo pacBio genome assembly: How to polish data without quiver?
... Hei,Pacbio have there assembly pipeline ,if you use the canu ,just use the canu to assembly subreads fasta,needn't to polish the reads,canu can do it ! Alex ...
written 7 months ago by Alex20
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Comment: C: an urgent problrm
... I'm so sorry for for the problem is not clearly,yeah,I want to obtain the file 1 and file 2 commom things whose first Column names is the same and others Column different. finally combine the file1 and file2 commom things to another file Alex ...
written 7 months ago by Alex20

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