User: aidpranculis

gravatar for aidpranculis
Reputation:
0
Status:
New User
Last seen:
9 months, 2 weeks ago
Joined:
1 year, 4 months ago
Email:
a***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by aidpranculis

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
519
views
0
answers
Comment: C: Microbiome 16s sequencing raw data analysis
... all join*.py scripts produce the same results. Only the multiple_split_libraries_fastq.py produces a single .fna file, but it is a demultiplexing script so I am not sure how it deals with paired end and multi-lane .fastq files from a single sample. ...
written 9 months ago by aidpranculis0
0
votes
0
answers
519
views
0
answers
Comment: C: Microbiome 16s sequencing raw data analysis
... the tutorial does not deal with multi lane, paired end demultiplexed samples. I am unsure in the multiple_split_libraries_fastq.py script performs well on this data. ...
written 9 months ago by aidpranculis0
0
votes
0
answers
519
views
0
answers
Comment: C: Microbiome 16s sequencing raw data analysis
... I have tried using the script yet most of the reads are left unjoined. Any ideas on how to overcome this? ...
written 9 months ago by aidpranculis0
0
votes
0
answers
519
views
0
answers
Microbiome 16s sequencing raw data analysis
... Hi, I've received my microbiome sequencing results from uBiome and I am trying to analyze the raw reads using QIIME 1.9.1. The files are as follows: ssr_100__R1__L001.fastq.gz, ssr_100__R1__L002.fastq.gz, ssr_100__R1__L003.fastq.gz, ssr_100__R1__L004.fastq.gz, ssr_100__R2_ ...
microbiome 16s next-gen fastq qiime written 9 months ago by aidpranculis0 • updated 9 months ago by genomax40k
0
votes
1
answer
396
views
1
answers
Comment: C: genotype frequency data
... true, but i am looking for genotype frequencies ...
written 14 months ago by aidpranculis0
0
votes
1
answer
396
views
1
answer
genotype frequency data
... There are a lot of tools out there to annotate variation and get allele frequencies from different project data, but can anyone suggest a method (not a browser) or a tool to get genotype frequencies/counts for variants from projects like 1000g, UK10k or aggregation consortia like gnomAD and Kaviar? ...
frequency genotype gnomad written 14 months ago by aidpranculis0 • updated 14 months ago by Ron690

Latest awards to aidpranculis

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1567 users visited in the last hour