User: karim

gravatar for karim
karim20
Reputation:
20
Status:
New User
Location:
Düsseldorf
Last seen:
2 years, 3 months ago
Joined:
2 years, 10 months ago
Email:
k****@benyaa.com

Posts by karim

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
450
views
0
answers
Variant Predicition Index
... Hey together, I have done several GenePanel Sequencing runs on the miSeq and in the analysis I get a value for the "Varaint Predicition Index". Can anyone explain me, what this index tell me? I used UMI´s in my libraries. (molecular tags) Thanks! ...
ngs genepanel written 2.3 years ago by karim20
1
vote
0
answers
744
views
0
answers
Comment: C: CNAnorm Error -> dataFrame2object
... Thanks for your help! I will post that problem on that site and if I will get an answer I will post it here. ...
written 2.9 years ago by karim20
0
votes
0
answers
744
views
0
answers
Comment: C: CNAnorm Error -> dataFrame2object
... So, me again. Got another Problem with some of my Samples. Sometimes I got this Error: CN <- addDNACopy(CN) Error in (function(...,row.names = NULL, check.rows = FALSE, check.names = TRUE, : arguments imply differing number of rows: 303, 301 after I done this: library(CNAnor ...
written 2.9 years ago by karim20
0
votes
1
answer
1.1k
views
1
answers
Comment: C: cn-mops Error "Missing refSeqName"
... That mean I just can add "refSeqName" as option? And can say, that the function should take all chromosomes as reference? Like: bamDataRanges <- getReadCountsFromBAM(BAMFiles, mode="unpaired", refSeqName=c("chr1", "chr2"....)) something like this? ...
written 2.9 years ago by karim20
3
votes
1
answer
1.1k
views
1
answer
cn-mops Error "Missing refSeqName"
... Hey together, I started to work with cn-mops, but got all the time the same Error, after I start the program: library(ggplot2) library(cn.mops) BAMFiles <- list.files(pattern=".bam$") bamDataRanges <- getReadCountsFromBAM(BAMFiles, mode="unpaired") Identi ...
R cn-mops refseqname cnmops written 2.9 years ago by karim20 • updated 2.9 years ago by Devon Ryan91k
1
vote
0
answers
744
views
0
answers
Comment: C: CNAnorm Error -> dataFrame2object
... THANK YOU! It works! sample <- read.table("sample.tab", header=TRUE) CN <- dataFrame2object(sample) ...
written 2.9 years ago by karim20
0
votes
1
answer
3.4k
views
1
answers
Comment: C: What is ref sequence name in BAM file header ?
... I have the same problem, but I don´t understand your solution. I just tried to copy and past, but nothing happen... Can someone explain me, what I have to do? pls! ...
written 2.9 years ago by karim20
4
votes
0
answers
744
views
0
answers
CNAnorm Error -> dataFrame2object
... Hey together, I wanted to use CNAnorm for some analysis with my NGS-Data. And directly at the beginning I got an error, which I can´t solve by my self. (and with my self I mean Google) So this is what I have done in R: library(CNAnorm) set.seed(31) CN <- dataFrame2object("sample.ta ...
cna ngs cnanorm cnv written 2.9 years ago by karim20 • updated 2.9 years ago by Devon Ryan91k

Latest awards to karim

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1604 users visited in the last hour