User: Thaman

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Thaman3.2k
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Finland
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Bioinformatics research assistant at Proteomics lab

Posts by Thaman

<prev • 264 results • page 1 of 27 • next >
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Comment: C: Parse Uniprot Fasta Record, Save It, Trim It And Quantify Each Residue
... Total number of each residue == sequence length you mean? What you want to do with total number of each residue? just to place them after filename (e.g filename_312)? ...
written 6.3 years ago by Thaman3.2k
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Answer: A: Parse Uniprot Fasta Record, Save It, Trim It And Quantify Each Residue
... Here, I have written in Python which does the job. If you want to get more information regarding the any uniprot ID then its better to fetch xml (http://www.uniprot.org/uniprot/P02070.xml) file rather then fasta and parse the needed content using either lxml, SAX or dom. If you want then I can writ ...
written 6.3 years ago by Thaman3.2k
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Comment: C: Creating Table From Fasta File In Python
... Check out the different string split functions in the Python and other like startswith, endswith. ...
written 6.3 years ago by Thaman3.2k
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Answer: A: Fold Change Problem In Rankproduct Bioconductor Package
... If you want straightforward rankproduct result then look into the RankProdIt interactive web tool which also uses the R RankProd package. Further, normalization is important as Michael Dondrup mentioned. The result will something like this ...
written 6.3 years ago by Thaman3.2k
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Answer: A: How Has Bioinformatics Improved Over Time?
... Distributed computing using Hadoop in various fields: Hadoop-BAM Hydra Biodoop and many more Quora ...
written 6.4 years ago by Thaman3.2k
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Comment: C: How To Learn About Next Generation Gene Sequencing
... Already asked -> From where to Start next-gen-sequencing? ...
written 6.4 years ago by Thaman3.2k • updated 6.4 years ago by Istvan Albert ♦♦ 80k
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Comment: C: New Feature: Using Shortcuts To Embed Content Such As Gist Or To Display Biostar
... Excellent features and I want to suggest one more link (Workshops/Conferences) after Jobs which will provide information to BioStar users regarding whats going to happen/had have happened. ...
written 6.8 years ago by Thaman3.2k
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Answer: A: Height Of The Hcluster Dendrogram In R
... I think this should work plot(hclust(d), hang=1, labels=groups) ...
written 6.9 years ago by Thaman3.2k
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Comment: C: Scientific Programmer, Resequencing Informatics, Ebi, Hinxton, Cambridge
... The deadline is on 22 August and you posted two days back! ...
written 6.9 years ago by Thaman3.2k
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Comment: C: Domain-Based Clustering Of Protein Structures
... In particular chipster doesn't work for structures that's right. But, my point was regarding clustering and chipster does that in one click if dataset from any source has been already preprocessed. Right now I am using Chipster for Proteomics dataset even though its entirely meant for Microarray and ...
written 6.9 years ago by Thaman3.2k

Latest awards to Thaman

Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: How To Run Clustalw Using Commands From An Input File
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Xml In Bioinformatics, Relevance And Uses
Voter 5.4 years ago, voted more than 100 times.
Good Question 5.4 years ago, asked a question that was upvoted at least 5 times. For Python Documentation Tools
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Clustalw Multiple Sequence Alignment Visualization
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Phylip (->Prodist) Command Line Wrapper In Biopython
Great Question 5.4 years ago, created a question with more than 5,000 views. For Fasta File To Phylogenetic Tree
Centurion 5.4 years ago, created 100 posts.
Supporter 5.4 years ago, voted at least 25 times.
Guru 5.4 years ago, received more than 100 upvotes.
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Fasta File To Phylogenetic Tree
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: How To Read A Phylogenetic Tree
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Creating Relational Database From Xml Schema?
Commentator 5.4 years ago, created a comment with at least 3 up-votes. For C: Why Do You Want To Work In This Lab?
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Python Documentation Tools
Good Answer 5.4 years ago, created an answer that was upvoted at least 5 times. For A: Incentive For Learning Emboss
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Pariwise Local And Global Alignment
Appreciated 5.4 years ago, created a post with more than 5 votes. For A: Can Bioinfo Projects Grow On Large Social Networks?
Popular Question 5.4 years ago, created a question with more than 1,000 views. For Tools & Techniques Bioinformatician Have To Master?
Commentator 6.4 years ago, created a comment with at least 3 up-votes. For C: How To Learn About Next Generation Gene Sequencing
Teacher 7.3 years ago, created an answer with at least 3 up-votes. For A: Best Way For A Beginner To Get Up To Speed On Unix Quickly?
Commentator 7.7 years ago, created a comment with at least 3 up-votes. For C: Why Do You Want To Work In This Lab?
Teacher 7.8 years ago, created an answer with at least 3 up-votes. For A: What Are The Best Bioinformatics Course Materials And Videos (Available Online)?
Good Answer 7.8 years ago, created an answer that was upvoted at least 5 times. For A: What Are The Best Bioinformatics Course Materials And Videos (Available Online)?

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