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2
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1
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1.8k
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Answer: A: Huge difference in BWA mapping times
updated 21 months ago by 34k • written 5.7 years ago by 13k
1
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1
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3.1k
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Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 21 months ago by 34k • written 5.7 years ago by 13k
5
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1
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3.7k
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Answer: A: PhD research proposal - Need current topics
updated 21 months ago by 34k • written 5.7 years ago by 13k
0
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0
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5.4k
views
Answer: A: Multiprocessing in Python with subprocess to align several files with coding DNA
updated 21 months ago by 34k • written 5.7 years ago by 13k
2
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0
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3.7k
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Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 22 months ago by 34k • written 5.9 years ago by 13k
2
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2
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1.6k
views
Answer: A: In Jellyfish, what does the "-C" switch do?
updated 23 months ago by 34k • written 5.9 years ago by 13k
0
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0
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5.0k
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Answer: A: Installing cutadapt on OS X
updated 23 months ago by 34k • written 6.0 years ago by 13k
0
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1
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1.2k
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Answer: A: Post tagging etiquette musings
updated 23 months ago by 34k • written 6.0 years ago by 13k
3
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1
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8.4k
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Answer: A: vcf to bam
updated 23 months ago by 34k • written 6.1 years ago by 13k
0
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1
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3.1k
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Answer: A: Design arbitrary degenerate primers (with non-binding criteria)
updated 23 months ago by 34k • written 6.3 years ago by 13k
1
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1
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2.0k
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Answer: A: All sam flags specifying first mate?
updated 24 months ago by 34k • written 6.3 years ago by 13k
3
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2
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2.4k
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Answer: A: Correlating ChIP-Seq peaks with isoform level expression
updated 24 months ago by 34k • written 6.4 years ago by 13k
2
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0
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10k
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Answer: A: Checking fastq is valid
updated 2.4 years ago by 34k • written 4.8 years ago by 13k
2
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0
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1.8k
views
Answer: A: BAM files for RRBS data in ENCODE Project
updated 3.1 years ago by 34k • written 5.7 years ago by 13k
1
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0
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2.4k
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Answer: A: Sort Sequences In A Fasta File According To The peg List
updated 3.1 years ago by 34k • written 5.7 years ago by 13k
2
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0
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1.6k
views
Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
updated 3.1 years ago by 34k • written 5.7 years ago by 13k
3
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0
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3.5k
views
Answer: A: Check BAMs are complete and clean
updated 3.1 years ago by 34k • written 5.7 years ago by 13k
1
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1
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1.8k
views
Answer: A: Is there an authoritative source for optional BAM tags?
updated 3.1 years ago by 34k • written 5.7 years ago by 13k
2
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0
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16k
views
Answer: A: Check if BAM is derived from pair-end or single-end reads?
updated 3.1 years ago by 34k • written 5.4 years ago by 13k
0
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0
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32k
views
Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
updated 3.1 years ago by 34k • written 6.7 years ago by 13k
2
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1
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8.3k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 3.1 years ago by 34k • written 5.8 years ago by 13k
0
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0
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2.4k
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Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
4.0 years ago by John 13k
3
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0
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14k
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Answer: A: Meaning of BWA-MEM MAPQ values
4.0 years ago by John 13k
16
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2
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70k
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Answer: A: samtools sorting and indexing
4.3 years ago by John 13k
4
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2
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9.5k
views
Answer: A: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
4.4 years ago by John 13k
0
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0
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1.6k
views
Answer: C: Keeping Tags That Are Mapped To The Same Place By Two Aligners
4.4 years ago by John 13k
2
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1
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3.7k
views
Answer: A: Why bioinformaticians need to know programming languages?
4.4 years ago by John 13k
2
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1
reply
1.1k
views
Answer: A: Collaboration on an empirical QC tool
4.5 years ago by John 13k
2
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0
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1.3k
views
Answer: A: why does this pipe work
4.5 years ago by John 13k
7
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1
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4.0k
views
Answer: A: Good practices while dealing with very large datasets
4.5 years ago by John 13k
1
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2
replies
4.7k
views
Answer: C: Programming language use distribution from recent programs / articles
4.5 years ago by John 13k
1
vote
1
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12k
views
Answer: A: pybam - 100% python BAM reader
4.5 years ago by John 13k
0
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1
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1.5k
views
Answer: A: SAM to BAM conversion issues
4.6 years ago by John 13k
1
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0
replies
2.6k
views
Answer: A: identification of adapters from fastq file.
updated 4.6 years ago by 46k • written 4.6 years ago by 13k
4
votes
2
replies
2.5k
views
Answer: A: What to use after Salmon
4.6 years ago by John 13k
4
votes
1
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1.6k
views
Answer: C: Does jellyfish 2 support kmer size > 31
4.6 years ago by John 13k
0
votes
1
reply
2.3k
views
Answer: A: basic concepts behind --sjdbOverhang (STAR)
4.6 years ago by John 13k
7
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1
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1.7k
views
Answer: A: How do you perform functional testing for your Bioinformatics tools?
4.6 years ago by John 13k
1
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0
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3.6k
views
Answer: A: bam stats F1F2/F1R2/R1F2/R1R2/F2F1/F2R1/R2F1/R2R1
4.6 years ago by John 13k
0
votes
3
replies
2.7k
views
Answer: A: fasta seq header
4.7 years ago by John 13k
1
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0
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1.5k
views
Answer: A: Hand-waving Multidisciplinary Aspects of Research Projects (Discussion)
4.7 years ago by John 13k
3
votes
2
replies
2.2k
views
Answer: A: Explaining purpose of using FASTQC to a colleague
4.7 years ago by John 13k
3
votes
0
replies
1.9k
views
Answer: A: Error sorted paired-end .bam using samtools
4.8 years ago by John 13k
0
votes
1
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796
views
Answer: A: Essential TeX functions/packages
4.8 years ago by John 13k
1
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2
replies
1.4k
views
Answer: A: Possible bug in seqkit?
4.8 years ago by John 13k
1
vote
1
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18k
views
Answer: A: Duplicates on Illumina
4.8 years ago by John 13k
3
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4
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2.5k
views
Answer: A: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
4.8 years ago by John 13k
0
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1
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1.6k
views
Answer: A: error when running MarkDuplicates
4.8 years ago by John 13k
2
votes
1
reply
981
views
Answer: A: Why my regular expression fails to match all the reasonable seq?
4.8 years ago by John 13k
0
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1
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5.2k
views
Answer: A: BAM to FASTQ
4.8 years ago by John 13k
187 results • Page 1 of 4
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