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2
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2.5k
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Answer: A: Huge difference in BWA mapping times
updated 3.9 years ago by 41k • written 7.8 years ago by 13k
1
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1
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4.4k
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Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 3.9 years ago by 41k • written 7.8 years ago by 13k
5
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1
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4.9k
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Answer: A: PhD research proposal - Need current topics
updated 3.9 years ago by 41k • written 7.8 years ago by 13k
0
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0
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6.3k
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Answer: A: Multiprocessing in Python with subprocess to align several files with coding DNA
updated 3.9 years ago by 41k • written 7.8 years ago by 13k
2
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0
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5.8k
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Answer: A: IGV not showing the variants detected by GATK and Varscan
updated 4.0 years ago by 41k • written 8.0 years ago by 13k
2
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2
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2.5k
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Answer: A: In Jellyfish, what does the "-C" switch do?
updated 4.0 years ago by 41k • written 8.0 years ago by 13k
0
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0
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7.3k
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Answer: A: Installing cutadapt on OS X
updated 4.0 years ago by 41k • written 8.1 years ago by 13k
0
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1
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1.7k
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Answer: A: Post tagging etiquette musings
updated 4.0 years ago by 41k • written 8.1 years ago by 13k
5
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1
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14k
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Answer: A: vcf to bam
updated 4.0 years ago by 41k • written 8.2 years ago by 13k
0
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1
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4.2k
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Answer: A: Design arbitrary degenerate primers (with non-binding criteria)
updated 4.1 years ago by 41k • written 8.4 years ago by 13k
1
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1
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2.7k
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Answer: Answer: All sam flags specifying first mate?
updated 11 months ago by 41k • written 8.4 years ago by 13k
3
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2
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3.1k
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Answer: A: Correlating ChIP-Seq peaks with isoform level expression
updated 4.1 years ago by 41k • written 8.5 years ago by 13k
2
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0
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18k
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Answer: A: Checking fastq is valid
updated 4.5 years ago by 41k • written 6.9 years ago by 13k
2
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0
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2.3k
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Answer: A: BAM files for RRBS data in ENCODE Project
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
1
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0
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3.4k
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Answer: A: Sort Sequences In A Fasta File According To The peg List
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
2
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0
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2.2k
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Answer: A: "Good" epigenetic histone modification ChIP-seq datasets
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
3
votes
0
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5.1k
views
Answer: A: Check BAMs are complete and clean
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
1
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1
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2.4k
views
Answer: A: Is there an authoritative source for optional BAM tags?
updated 5.2 years ago by 41k • written 7.8 years ago by 13k
2
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0
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23k
views
Answer: A: Check if BAM is derived from pair-end or single-end reads?
updated 5.2 years ago by 41k • written 7.5 years ago by 13k
0
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0
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37k
views
Answer: A: How To Get Number Of Reads In Bam File Efficiently In Python?
updated 5.2 years ago by 41k • written 8.8 years ago by 13k
2
votes
1
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10k
views
Answer: A: cannot import pysam. Module has no attribute error
updated 5.2 years ago by 41k • written 7.9 years ago by 13k
0
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0
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3.6k
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Answer: A: Is there any disease mainly caused by underexpression or overexpression of some
6.1 years ago by John 13k
3
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0
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21k
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Answer: A: Meaning of BWA-MEM MAPQ values
6.1 years ago by John 13k
25
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2
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92k
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Answer: A: samtools sorting and indexing
6.4 years ago by John 13k
5
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2
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13k
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Answer: A: Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score doe
6.5 years ago by John 13k
0
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0
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2.1k
views
Answer: C: Keeping Tags That Are Mapped To The Same Place By Two Aligners
6.5 years ago by John 13k
2
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1
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5.5k
views
Answer: A: Why bioinformaticians need to know programming languages?
6.5 years ago by John 13k
2
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1
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2.0k
views
Answer: A: Collaboration on an empirical QC tool
6.6 years ago by John 13k
2
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0
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2.3k
views
Answer: A: why does this pipe work
6.6 years ago by John 13k
7
votes
1
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5.8k
views
Answer: A: Good practices while dealing with very large datasets
6.6 years ago by John 13k
1
vote
2
replies
8.5k
views
Answer: C: Programming language use distribution from recent programs / articles
6.6 years ago by John 13k
1
vote
1
reply
18k
views
Answer: A: pybam - 100% python BAM reader
6.6 years ago by John 13k
0
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1
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2.1k
views
Answer: A: SAM to BAM conversion issues
6.6 years ago by John 13k
1
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0
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3.5k
views
Answer: A: identification of adapters from fastq file.
updated 6.7 years ago by 47k • written 6.7 years ago by 13k
4
votes
2
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3.1k
views
Answer: A: What to use after Salmon
6.7 years ago by John 13k
4
votes
1
reply
2.3k
views
Answer: C: Does jellyfish 2 support kmer size > 31
6.7 years ago by John 13k
0
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1
reply
3.7k
views
Answer: A: basic concepts behind --sjdbOverhang (STAR)
6.7 years ago by John 13k
7
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1
reply
2.9k
views
Answer: A: How do you perform functional testing for your Bioinformatics tools?
6.7 years ago by John 13k
1
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0
replies
5.6k
views
Answer: A: bam stats F1F2/F1R2/R1F2/R1R2/F2F1/F2R1/R2F1/R2R1
6.7 years ago by John 13k
0
votes
3
replies
6.1k
views
Answer: A: fasta seq header
6.8 years ago by John 13k
1
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0
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1.9k
views
Answer: A: Hand-waving Multidisciplinary Aspects of Research Projects (Discussion)
6.8 years ago by John 13k
3
votes
2
replies
3.4k
views
Answer: A: Explaining purpose of using FASTQC to a colleague
6.8 years ago by John 13k
3
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0
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2.8k
views
Answer: A: Error sorted paired-end .bam using samtools
6.9 years ago by John 13k
0
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1
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1.2k
views
Answer: A: Essential TeX functions/packages
6.9 years ago by John 13k
1
vote
2
replies
2.4k
views
Answer: A: Possible bug in seqkit?
6.9 years ago by John 13k
1
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1
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29k
views
Answer: A: Duplicates on Illumina
6.9 years ago by John 13k
3
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4
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4.4k
views
Answer: A: Example of how bioinformaticians can publish in Scientific Reports (by nature pu
6.9 years ago by John 13k
0
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1
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2.2k
views
Answer: A: error when running MarkDuplicates
6.9 years ago by John 13k
2
votes
1
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1.2k
views
Answer: A: Why my regular expression fails to match all the reasonable seq?
6.9 years ago by John 13k
0
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1
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7.9k
views
Answer: A: BAM to FASTQ
6.9 years ago by John 13k
186 results • Page 1 of 4
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