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Showing :
questions
37
votes
8
replies
51k
views
11 follow
Adding Read Groups To Bam Files
bam
gatk
samtools
bwa
updated 2.8 years ago by
zx8754
11k • written 11.8 years ago by
Zev.Kronenberg
12k
2
votes
3
replies
1.4k
views
building all possible phylogenies.
phylogenetics
updated 3.8 years ago by
Biostar
20 • written 7.0 years ago by
Zev.Kronenberg
12k
4
votes
2
replies
2.5k
views
Iranges Basic Binning
bioconductor
r
updated 5.3 years ago by
Biostar
20 • written 12.1 years ago by
Zev.Kronenberg
12k
22
votes
5
replies
7.6k
views
Aligning paired end fastq files dumped from SRA
paired
sra
fastq
bwa
mem
updated 2.2 years ago by
Ram
43k • written 9.4 years ago by
Zev.Kronenberg
12k
6
votes
2
replies
2.2k
views
Easy to use local assembly programs ?
local-assembly
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
Zev.Kronenberg
12k
6
votes
3
replies
2.0k
views
remove gapped bases in MSA
msa
alignment
updated 7.2 years ago by
abascalfederico
★ 1.2k • written 7.2 years ago by
Zev.Kronenberg
12k
8
votes
7
replies
2.4k
views
Splitting SAM/BAM alignments
htslib
sam
bam
cigar
updated 7.4 years ago by
Pierre Lindenbaum
161k • written 7.4 years ago by
Zev.Kronenberg
12k
7
votes
4
replies
10k
views
Samtools Dedup Documentation
samtools
updated 7.9 years ago by
Biostar
20 • written 11.5 years ago by
Zev.Kronenberg
12k
2
votes
1
reply
2.2k
views
A command line option for region in GenotypeGVCFs?
GATK
haplotypecaller
updated 21 months ago by
Ram
43k • written 8.2 years ago by
Zev.Kronenberg
12k
10
votes
8
replies
12k
views
bedtools 2.0 merge - "unable to open file or unable to determine types"
bedtools
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Zev.Kronenberg
12k
6
votes
1
reply
3.5k
views
BWA MEM mate pair rescue
bwa
paired-end
alignment
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Zev.Kronenberg
12k
0
votes
0
replies
1.6k
views
Publicly available Genome-strip calls for the platinum CEPH 1463?
structural-variant
updated 20 months ago by
Ram
43k • written 8.7 years ago by
Zev.Kronenberg
12k
4
votes
5
replies
3.2k
views
bwa MEM for illumina 1.3+
bwa
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
Zev.Kronenberg
12k
6
votes
3
replies
3.1k
views
consensus sequence from MSA using seqAn
cpp
seqAn
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Zev.Kronenberg
12k
5
votes
1
reply
4.0k
views
Vcf Statistics Given A Gff3 Annotation
gff3
vcf
annotation
updated 9.7 years ago by
Biostar
20 • written 10.2 years ago by
Zev.Kronenberg
12k
3
votes
3
replies
2.0k
views
Human Genbank Ids
genbank
blast
updated 10.2 years ago by
deanna.church
★ 1.1k • written 10.2 years ago by
Zev.Kronenberg
12k
1
vote
1
reply
1.9k
views
Tabix Perl Api Error?
samtools
tabix
perl
10.5 years ago by
Zev.Kronenberg
12k
2
votes
2
replies
3.9k
views
Unified Genotyper'S - Genotype Likelihood - Pl - Gq
gatk
updated 10.8 years ago by
DG
7.3k • written 10.8 years ago by
Zev.Kronenberg
12k
24
votes
12
replies
5.3k
views
6 follow
Simulating Read Depth
reads
depth-of-coverage
simulation
updated 2.3 years ago by
Ram
43k • written 10.8 years ago by
Zev.Kronenberg
12k
1
vote
1
reply
2.2k
views
Gatk Variantrecalibrator Resources
gatk
data
11.0 years ago by
Zev.Kronenberg
12k
3
votes
7
replies
7.3k
views
Samtools C Api Examples
samtools
c
api
updated 11.0 years ago by
Pierre Lindenbaum
161k • written 11.0 years ago by
Zev.Kronenberg
12k
29
votes
10
replies
36k
views
6 follow
Probability Of Finding A Dna Sequence In A Window
dna
primer
updated 11.0 years ago by
David W
4.9k • written 11.0 years ago by
Zev.Kronenberg
12k
15
votes
9
replies
4.1k
views
Composite Of Multiple Signals; Where Have You Gone?
fst
selection
updated 11.0 years ago by
Giovanni M Dall'Olio
28k • written 12.2 years ago by
Zev.Kronenberg
12k
8
votes
8
replies
4.9k
views
Python Tabix Api - Getnames ?
python
tabix
api
updated 11.1 years ago by
Aaronquinlan
12k • written 11.1 years ago by
Zev.Kronenberg
12k
5
votes
3
replies
2.2k
views
Looking For Test Bam File That Contains Variants And Multiple Forms Of Structural Arrangements
bam
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
Zev.Kronenberg
12k
10
votes
4
replies
2.6k
views
Sequence Haplotypes From 1Kg Project Variants
1000genomes
haplotype
vcf
updated 11.2 years ago by
Peixe
▴ 660 • written 11.2 years ago by
Zev.Kronenberg
12k
4
votes
3
replies
2.6k
views
Structural Breakpoint Frequency
next-gen
structural
updated 11.3 years ago by
Chris Miller
22k • written 11.3 years ago by
Zev.Kronenberg
12k
2
votes
4
replies
4.3k
views
Where Can I Download Lincrna Feature Files For The Mm9 Genome Build
gtf
gff
updated 11.5 years ago by
JC
13k • written 11.5 years ago by
Zev.Kronenberg
12k
1
vote
6
replies
2.6k
views
Gatk Indel Realignment Io Timeout?
gatk
11.7 years ago by
Zev.Kronenberg
12k
17
votes
2
replies
8.9k
views
Tricks And Tips For Ribosome Profiling?
rna-seq
next-gen
updated 11.9 years ago by
JC
13k • written 11.9 years ago by
Zev.Kronenberg
12k
4
votes
3
replies
2.5k
views
What Formats Are People Using For Pooled Sequencing Data?
sequencing
updated 9 months ago by
Ram
43k • written 12.0 years ago by
Zev.Kronenberg
12k
4
votes
2
replies
2.7k
views
Generating Go Ids
gene-ontology
enrichment
gff3
updated 12.0 years ago by
rama.gollapudi
▴ 60 • written 12.0 years ago by
Zev.Kronenberg
12k
1
vote
3
replies
2.9k
views
Igv - Loading Whole Non Model Organism Gff3 At Once
igv
gff3
viewer
updated 12.0 years ago by
SES
8.6k • written 12.0 years ago by
Zev.Kronenberg
12k
12
votes
8
replies
3.6k
views
False Positives In Disease Gene Hunting - Truseq Exome Enrichment Kit - A Call For Data
exome
next-gen
data
updated 12.0 years ago by
Khader Shameer
18k • written 12.0 years ago by
Zev.Kronenberg
12k
16
votes
13
replies
10k
views
6 follow
Genome Wide Plots In [R]
plot
r
updated 12.1 years ago by
bdemarest
▴ 460 • written 12.1 years ago by
Zev.Kronenberg
12k
3
votes
4
replies
5.3k
views
Gatk Indel Realignment Error - Mismatch In Index Files And Dict File
gatk
indel
error
12.1 years ago by
Zev.Kronenberg
12k
5
votes
3
replies
2.4k
views
Shared Genomic Segments In Exome Data.
exome
updated 12.1 years ago by
Alex Paciorkowski
3.5k • written 12.1 years ago by
Zev.Kronenberg
12k
1
vote
2
replies
2.5k
views
Tabix Query - End Of Chromosome.
tabix
perl
api
updated 12.2 years ago by
lh3
33k • written 12.2 years ago by
Zev.Kronenberg
12k
40
votes
9
replies
11k
views
Sorting Chrs In [R]
r
parsing
sort
updated 12.2 years ago by
Jeremy Leipzig
22k • written 12.2 years ago by
Zev.Kronenberg
12k
0
votes
0
replies
1.7k
views
Beagle To Arlequin Converter
12.3 years ago by
Zev.Kronenberg
12k
7
votes
7
replies
5.0k
views
Samtools Vcf Format Depth Discrepancy?
vcf
read
samtools
updated 12.4 years ago by
Deniz
• 0 • written 12.4 years ago by
Zev.Kronenberg
12k
8
votes
5
replies
5.7k
views
Plink - Non Human Data
plink
population
format
updated 12.4 years ago by
Caddymob
▴ 1000 • written 12.4 years ago by
Zev.Kronenberg
12k
42 results • Page
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