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Answer: A: Not able to run Contrail assembler with fasta and fastq file formats...
7.3 years ago by saranpons3 ▴ 70
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Do we have any other de novo assembly approaches than Graph based (OLC and De bruijn), Seed Extension(examples:SSAKE,VCAKE..) and String graph based?
de novo Assembly
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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test_reads.fa file from velvet data folder contains single-end reads or paired-end reads?
velvet assembly data test_reads.fa
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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Comment: C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
7.5 years ago by saranpons3 ▴ 70
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Why less number of hadoop/spark based de novo assemblers?
Hadoop Spark Big data De novo Assembly
updated 7.5 years ago by 10k • written 7.5 years ago by ▴ 70
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Comment: C: Denovo Assembly Coverage cutoff and Expected Coverage
7.6 years ago by saranpons3 ▴ 70
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Comment: C: Denovo Assembly Coverage cutoff and Expected Coverage
7.6 years ago by saranpons3 ▴ 70
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Denovo Assembly Coverage cutoff and Expected Coverage
Assembly
7.6 years ago by saranpons3 ▴ 70
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