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Comment: C: What is the recommended sequencing depth for ChIRP-seq?
6.7 years ago by Chirag Nepal ★ 2.4k
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1
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6.6k
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Comment: C: Plotting copy number varation: amplification and deletion data from GISTIC
7.0 years ago by Chirag Nepal ★ 2.4k
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10k
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Comment: C: How to get promoter coordinates of hg19 from UCSC genome browser ?
7.0 years ago by Chirag Nepal ★ 2.4k
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2.2k
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Comment: C: Mismatch on first base gives wrong TSS
7.0 years ago by Chirag Nepal ★ 2.4k
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1
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3.9k
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Comment: C: trimming reads in fastq file
7.0 years ago by Chirag Nepal ★ 2.4k
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3.7k
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Comment: C: Displaying somatic mutational signatures
7.1 years ago by Chirag Nepal ★ 2.4k
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2.2k
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Comment: C: Mismatch on first base gives wrong TSS
7.2 years ago by Chirag Nepal ★ 2.4k
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1
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2.0k
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Comment: C: smallRNA - adaptor trimming stringency
7.2 years ago by Chirag Nepal ★ 2.4k
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1
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2.2k
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Comment: C: Mismatch on first base gives wrong TSS
7.2 years ago by Chirag Nepal ★ 2.4k
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1
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1.9k
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Comment: C: Variants called differ dramatically between runs
7.3 years ago by Chirag Nepal ★ 2.4k
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3.7k
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Comment: C: Somatic Mutation Identification without Paired Normal Sample
7.3 years ago by Chirag Nepal ★ 2.4k
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4.2k
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Comment: C: Ribosomal RNA in RNA-seq data
7.4 years ago by Chirag Nepal ★ 2.4k
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7.2k
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Comment: C: Intersectbed/Coveragebed -Split Purify Exon?
7.4 years ago by Chirag Nepal ★ 2.4k
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5.6k
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Comment: Comment: Identify somatic mutations in cancer exome without a matched pair.
updated 2.0 years ago by 43k • written 7.5 years ago by ★ 2.4k
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Comment: C: Finding Ultraconserved elements between human and zebrafish
7.5 years ago by Chirag Nepal ★ 2.4k
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2.8k
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Comment: C: Predict if the mutation is activating or deactivating
7.6 years ago by Chirag Nepal ★ 2.4k
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1
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1.5k
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Comment: C: lncRNA annoatation in common crap
7.7 years ago by Chirag Nepal ★ 2.4k
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1
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3.6k
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Comment: C: How can I increase the number of peaks using macs2 peak caller?
7.7 years ago by Chirag Nepal ★ 2.4k
1
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1
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1.4k
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Comment: C: Genome Music: Most significant hits lack p-value
7.9 years ago by Chirag Nepal ★ 2.4k
1
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0
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4.0k
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Comment: C: Bioinformatics analyses hall of shame
7.9 years ago by Chirag Nepal ★ 2.4k
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1
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23k
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Comment: C: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in popu
8.0 years ago by Chirag Nepal ★ 2.4k
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0
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22k
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Comment: C: Where Can I Find Mutation Databases Specialized In Cancer?
8.1 years ago by Chirag Nepal ★ 2.4k
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50k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 03/10/16)
8.1 years ago by Chirag Nepal ★ 2.4k
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0
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3.6k
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Comment: C: Gene Ontology without enrichment analysis
8.1 years ago by Chirag Nepal ★ 2.4k
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1
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6.6k
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Comment: C: Plotting copy number varation: amplification and deletion data from GISTIC
8.2 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.4k
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Comment: C: Pathway enrichment for Copy Number Alterations (CNA)
8.3 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.9k
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Comment: C: Phastcons score interpretaion
8.3 years ago by Chirag Nepal ★ 2.4k
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2.3k
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Comment: C: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha
8.3 years ago by Chirag Nepal ★ 2.4k
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2
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4.1k
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Comment: C: Significance of reads mapping to Viruses - FusionCatcher
8.4 years ago by Chirag Nepal ★ 2.4k
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0
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4.1k
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Comment: C: Significance of reads mapping to Viruses - FusionCatcher
8.4 years ago by Chirag Nepal ★ 2.4k
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0
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5.5k
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Comment: C: H3K4Me3 ChIP-Seq signal at promoter
8.4 years ago by Chirag Nepal ★ 2.4k
0
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0
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4.2k
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Comment: C: Copy number variation from BAM and VCF files?
8.4 years ago by Chirag Nepal ★ 2.4k
2
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3.3k
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Comment: C: Normalization in RNA-seq
8.5 years ago by Chirag Nepal ★ 2.4k
0
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1
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2.9k
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Comment: C: breakdancer - cfg creation and chi square problem
8.5 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.2k
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Comment: C: Bam2Cfg.Pl And Breakdancer
8.5 years ago by Chirag Nepal ★ 2.4k
0
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0
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2.1k
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Comment: Comment: How to Convert SNP's that produced from Varscan into 0,1,2 ?
updated 19 months ago by 43k • written 8.5 years ago by ★ 2.4k
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0
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2.2k
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Comment: C: Cancer signature, Transition/Transversion inclduing tri-nucleotide
8.5 years ago by Chirag Nepal ★ 2.4k
0
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0
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4.8k
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Comment: C: H3K4me3 and H3K27ac double peaks near TSS
8.5 years ago by Chirag Nepal ★ 2.4k
0
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0
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3.0k
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Comment: Comment: CNV analysis tool Question With two samples tumor and normal,is there any softwa
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
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0
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5.1k
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Comment: Comment: CNV tools for WGS data
updated 2.7 years ago by 43k • written 8.6 years ago by ★ 2.4k
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1
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6.3k
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Comment: C: Many overrepresented sequences in RNA-seq data. Should them be trimmed out?
8.6 years ago by Chirag Nepal ★ 2.4k
1
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1
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1.8k
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Comment: C: Is it normal that my RNA degradation plot shows more degradation at the 3'-end?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.9k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
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0
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4.6k
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Comment: C: How to compare CNV events?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.9k
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Comment: C: Visualizing aCGH in IGV and deletions overlapping amplifications?
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.0k
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Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
8.6 years ago by Chirag Nepal ★ 2.4k
0
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1
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3.0k
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Comment: C: CNV analysis tool Question With two samples tumor and normal,is there any softwa
8.6 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.9k
views
Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
0
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0
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4.2k
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Comment: Comment: Method To Identify Focal Amplification
updated 18 months ago by 43k • written 8.6 years ago by ★ 2.4k
0
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0
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1.9k
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Comment: Comment: JISTIC. Make Probe location file to compare copy number among samples
updated 19 months ago by 43k • written 8.6 years ago by ★ 2.4k
176 results • Page 2 of 4
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