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0
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2
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2.1k
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Determine whether it is MSI (micro satellite instability) or not
MSI msisensors
updated 5.8 years ago by ▴ 60 • written 5.8 years ago by ★ 2.4k
0
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1
reply
3.0k
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Comment: C: How to merge chr+strand+coordinate+score from multiple files?
5.9 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.0k
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Comment: C: Identifying ago2 enriched genes under 2 different conditions
6.0 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
16k
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Comment: C: Installation of the MuSiC suite on unsupported Linux distributions
6.0 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
1.5k
views
Comment: C: Tophat2 error: failed to retrieve right/left read for pair
6.0 years ago by Chirag Nepal ★ 2.4k
1
vote
1
reply
1.6k
views
Count intron retention reads from BAM files
samtools intron-retention
updated 6.0 years ago by ★ 2.9k • written 6.0 years ago by ★ 2.4k
2
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1
reply
1.9k
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Comment: A: Tophat not installing with Biostar Handbook
6.1 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
1.8k
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Comment: C: How to determine high-quality somatic mutations
6.1 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
3.0k
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Comment: C: Finding zebrafish promoters ENSEMBL
6.1 years ago by Chirag Nepal ★ 2.4k
0
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0
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8.8k
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Comment: C: Small RNA sequence, how to calculate read counts? What's the criterion? Is there
6.2 years ago by Chirag Nepal ★ 2.4k
0
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2
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6.4k
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Comment: C: Best/right way to quantify small RNA transcripts
6.2 years ago by Chirag Nepal ★ 2.4k
7
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4
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6.4k
views
Best/right way to quantify small RNA transcripts
small RNA-seq RPM multi-mapping
updated 11 months ago by • 0 • written 6.2 years ago by ★ 2.4k
0
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1
reply
8.8k
views
Comment: C: Small RNA sequence, how to calculate read counts? What's the criterion? Is there
6.2 years ago by Chirag Nepal ★ 2.4k
8
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1
reply
3.4k
views
Answer: A: enhancer RNA counting from RNASeq data
6.2 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
4.1k
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Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
4.1k
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Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
4.1k
views
Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
0
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2
replies
4.1k
views
Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
4.1k
views
Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
4.1k
views
Comment: C: about somatic mutation calling
6.2 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
1.4k
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Comment: C: Excised exon or transcribed snoRNA?
6.4 years ago by Chirag Nepal ★ 2.4k
42
votes
16
replies
23k
views
15 follow
Tutorial: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in population.
GISTIC varscan2 CNV copy-number
updated 20 months ago by 43k • written 8.6 years ago by ★ 2.4k
7
votes
6
replies
11k
views
How To Extract Spliced Rnaseq Reads
RNA-seq
updated 16 months ago by 43k • written 10.3 years ago by ★ 2.4k
0
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0
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3.6k
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Comment: C: Uniquely mapped in Human
6.6 years ago by Chirag Nepal ★ 2.4k
0
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0
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1.6k
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Comment: C: Virus sequence detected in my RNA-seq reads
6.7 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
1.4k
views
Transcriptional strand bias on SNV from exome data
SNV exome Strand-bias
updated 6.7 years ago by 20 • written 6.7 years ago by ★ 2.4k
1
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0
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2.3k
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Comment: C: miRNA identification from RNA seq data
6.7 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
1.5k
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Comment: C: What is the recommended sequencing depth for ChIRP-seq?
6.7 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
6.6k
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Comment: C: Plotting copy number varation: amplification and deletion data from GISTIC
7.0 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
10k
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Comment: C: How to get promoter coordinates of hg19 from UCSC genome browser ?
7.0 years ago by Chirag Nepal ★ 2.4k
3
votes
1
reply
10k
views
Answer: A: How to get promoter coordinates of hg19 from UCSC genome browser ?
7.0 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
2.2k
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Comment: C: Mismatch on first base gives wrong TSS
7.0 years ago by Chirag Nepal ★ 2.4k
4
votes
7
replies
2.2k
views
Mismatch on first base gives wrong TSS
first-base mismatch clip-mismatch CIGAR CAGE
updated 7.0 years ago by ★ 2.9k • written 7.2 years ago by ★ 2.4k
0
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1
reply
3.9k
views
Comment: C: trimming reads in fastq file
7.0 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
3.7k
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Comment: C: Displaying somatic mutational signatures
7.1 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
2.2k
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Comment: C: Mismatch on first base gives wrong TSS
7.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.0k
views
Comment: C: smallRNA - adaptor trimming stringency
7.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
2.2k
views
Comment: C: Mismatch on first base gives wrong TSS
7.2 years ago by Chirag Nepal ★ 2.4k
0
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1
reply
1.9k
views
Comment: C: Variants called differ dramatically between runs
7.3 years ago by Chirag Nepal ★ 2.4k
0
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0
replies
3.7k
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Comment: C: Somatic Mutation Identification without Paired Normal Sample
7.3 years ago by Chirag Nepal ★ 2.4k
1
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1
reply
4.2k
views
Comment: C: Ribosomal RNA in RNA-seq data
7.4 years ago by Chirag Nepal ★ 2.4k
1
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0
replies
1.5k
views
Answer: A: Detecting non-exonic conserved regions
7.4 years ago by Chirag Nepal ★ 2.4k
3
votes
0
replies
1.5k
views
Answer: A: Publishing and research fees
7.4 years ago by Chirag Nepal ★ 2.4k
4
votes
3
replies
2.4k
views
Exome-seq; Which tools to predict significantly muated genes .
music varscan CNV
updated 7.4 years ago by 20 • written 7.5 years ago by ★ 2.4k
0
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0
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7.2k
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Comment: C: Intersectbed/Coveragebed -Split Purify Exon?
7.4 years ago by Chirag Nepal ★ 2.4k
1
vote
0
replies
1.9k
views
Answer: A: identification of miRNA for zebrafish genes
7.4 years ago by Chirag Nepal ★ 2.4k
1
vote
3
replies
2.1k
views
Transcriptional regulator genes list
Genelist Transcriptional-regulator
updated 7.5 years ago by ▴ 10 • written 8.0 years ago by ★ 2.4k
0
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0
replies
5.6k
views
Comment: Comment: Identify somatic mutations in cancer exome without a matched pair.
updated 2.0 years ago by 43k • written 7.5 years ago by ★ 2.4k
0
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0
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2.0k
views
Comment: C: Finding Ultraconserved elements between human and zebrafish
7.5 years ago by Chirag Nepal ★ 2.4k
3
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1
reply
2.0k
views
Answer: A: Finding Ultraconserved elements between human and zebrafish
7.5 years ago by Chirag Nepal ★ 2.4k
307 results • Page 2 of 7
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