User: inaciogmedeiros

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Posts by inaciogmedeiros

<prev • 19 results • page 1 of 2 • next >
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Blog: Hacking QUAST and changing minimum allowed identity percentage setting
... Tutorial available in following link: https://medium.com/@boyinacio/hacking-quast-and-changing-minimum-allowed-identity-percentage-setting-c89ef30418cb ...
assembly tutorial quast genomics blog written 6 months ago by inaciogmedeiros10 • updated 6 months ago by h.mon24k
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STAMP problem: one "child" in "tree" can't have more than one "parent"
... In a collaborative work, we've generated a profile file from an functional analysis performed in [SUPERFOCUS][1], but when we've put it in STAMP, an error message appeared saying that a value in one column had more than one "parent" in previous columns. [Something like that][2] According to STAMP, ...
metagenomics functional analysis stamp written 11 months ago by inaciogmedeiros10
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Error in SCRATCH Suite - dataset.pro not found
... I've run SCRATCH Suite (SSPro, ACCPro), downloaded from [here][1], but an error message is displayed saying that SCRATCH did not found file "dataset.pro", although directory in which this file should be is created, and has user permissions for accessing. Does anyone know how to solve this problem? ...
protein scratch written 11 months ago by inaciogmedeiros10
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Comment: C: How to set hhm_db and a3m_db for HHPRED?
... Hi folks. Since then, I've redirected my activities to other branches, although I'm expecting to return to HHPred soon. I'm gonna check if there's a bin directory, and hope that HHPred has been released new stable versions available for download (last time it was a beta version). ...
written 16 months ago by inaciogmedeiros10
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Comment: C: Doubt about specifying options in SPAdes
... -rw-r--r--. 1 inacio binfo 3,6K Set 28 11:49 /data/home/inacio/V3/missions/reproduce_pipeline_of_wyndemberg/sample_a_trimmed_fastx_trimmer_result.fastq ...
written 17 months ago by inaciogmedeiros10
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Comment: C: Doubt about specifying options in SPAdes
... Command I've posted was a "model" of how I'm using SPAdes (I've ended up forgetting to adapt error message, sorry). ...
written 17 months ago by inaciogmedeiros10
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Comment: C: Doubt about specifying options in SPAdes
... spades script is also being called via absolute path, from another external path from spades. ...
written 17 months ago by inaciogmedeiros10
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Comment: A: Doubt about specifying options in SPAdes
... An additional detail: argument for `--s1` is a absolute path for input.fastq. Does this make any substantial difference? ...
written 17 months ago by inaciogmedeiros10
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Comment: C: Doubt about specifying options in SPAdes
... Same error is still occuring. ...
written 17 months ago by inaciogmedeiros10
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Comment: C: Doubt about specifying options in SPAdes
... The version I am using is 3.11.0. ...
written 17 months ago by inaciogmedeiros10

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