User: biologo

gravatar for biologo
biologo20
Reputation:
20
Status:
New User
Location:
Last seen:
9 months, 1 week ago
Joined:
2 years, 8 months ago
Email:
b******@126.com

Posts by biologo

<prev • 33 results • page 1 of 4 • next >
0
votes
1
answer
977
views
1
answer
how to do TSNEPlot which differentiate the sample and cluster at the same time in scRNA-seq data?
... Dear all, I am still working on the scRNA-seq data(mixed 5 sets of data), and meet one more problem, after i use the k-means and t-SNE plot function,the figure what i can see the cluster grouped by sample or by by natural color. TSNEPlot(object = object) TSNEPlot(object = object,group.by=" ...
scrna-seq written 9 months ago by biologo20 • updated 9 months ago by ApoorvaB210
0
votes
1
answer
877
views
1
answers
Comment: C: how to visualize co-expression of several genes simultaneously in Featureplot (s
... many thanks, but that's not what i mean, i wanna one scatter plot which contain all the gene expression i want simultaneously, not split into many figure,and each figure shows the expression of single gene. ...
written 9 months ago by biologo20
0
votes
1
answer
877
views
1
answers
Comment: C: how to plot several gene in Featureplot(scRNA-seq) simultaneously?
... thanks, cpad, but can you mention a little bit more details, i web the grid package, and it seems like work on the picture layout ...
written 9 months ago by biologo20
1
vote
1
answer
877
views
1
answer
how to visualize co-expression of several genes simultaneously in Featureplot (scRNA-seq) in one figure?
... Dear all, I am analysis the 10X genomics scRNA-seq data nowadays, and the problem i met was i want to know a set of gene distribution along all the clusters. As i know the Featureplot support one gene or two gene, how can i plot a list of genes? typical code as follows: FeaturePlot(object = pb ...
scrna featureplot seurat written 9 months ago by biologo20 • updated 9 months ago by lehmannnathalie40810
0
votes
1
answer
2.6k
views
1
answers
Comment: C: plotting two genes in Seurat ScRNAseq
... Hi! Za i wanna know do you figure how to plot several genes simultaneously in Featureplot? because i am also find how to do with it. ...
written 9 months ago by biologo20
0
votes
1
answer
2.3k
views
1
answers
Comment: C: Increase the size of legend in pheatmap
... thank you very much, it works well now ...
written 10 months ago by biologo20
0
votes
1
answer
2.3k
views
1
answers
Comment: C: how to increase the size of legend in pheatmap
... THKs,i tried it, but seems doesn't work ...
written 10 months ago by biologo20
0
votes
1
answer
2.3k
views
1
answers
Comment: C: how to increase the size of legend in pheatmap
... sorry, it;s my fault. i try many ways to increase the size of legend(not the label), but all faild. the code like: pheatmap(data, method = c("pearson"), clustering_method = "complete", cellwidth = 80, cellheight = 80, treeheight_ ...
written 10 months ago by biologo20
0
votes
1
answer
2.3k
views
1
answer
Increase the size of legend in pheatmap
... Hi, I was using the pheatmap to cluster all the samples and do the visualization, but i was confused that how to increase the size legend which shows like that. Thank you so much. ...
R rna-seq heatmap written 10 months ago by biologo20 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
619
views
0
answers
how to judge the 10X genomics single cell data quality
... Dear all, i am analysis 10X genomics single cell data these days, but i donot know the specific standard to filter the sample, like how many gene it detect, how many cell it should have? or what other factors i should notice. Thanks for your help. ...
single cell written 12 months ago by biologo20

Latest awards to biologo

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 545 users visited in the last hour